Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0968 ATGGAAAGGATTCAGGACTCAAAATCACTTCCCTTGTTTTTGCCAATAGACATGCTTCCAGAACCAAGCGGAAAATTTCGCGCTTTGGATCATTTATTCAAAGCTCACGAGGCCTCCTCCGCCAGGTTGAATTCGCACTCGGCTAAGAATGTAAGAGAAGTAGGAAGATCTATTACGCATCCAGAAATCTTTGTGCCCACCACAAGGACATTGAAACAAAAATCGTCTTTGATCGGACGGGAGGAACTAAAGACATTGAAGGGTAGTAGTAGGAATTTGGTTGAGGAATGTGGTCCAAGTTCCTTTTCTGGGGCTAGTCATCCCCCAGAACCTGTGGATATGGATTTAATGAAAACTGTTTATGTACCCATAGGCCAAAATAAATCCGAGGCTGGATGCTTGATGAAGAGTTTTTCTGTGAAGGGCCTTTATCTTGAAGATCTTCCAACCAAGAAATCTAGTTCCCCAGAAGAACCACATGACTTGGGTGTTTTATTTTCCCCCTTTTCGGTTCCTCGTACATCACGAAATACAGATGATGCTTCGCTTCTTCCCCCGGATTCTGAGGAAAAGGAATGTGTTTGGGATGCTTCTCAGCCTCCAAGTGGCAATGTAAGTCCACTTAGTAGTATTGACAGTACAACTATAAGCTTTGTTAATAGCTGTGGTAGCACTTATCGTAGTGATGGAATGGTTAGCATATGTGAGAGTACAAAAGCGAGTGTTCGAGGGGGGGATTCACATTCACTTGAGAGTGCAAAAACGAGTATCAGTCGAGCTAGCAATAGCAGTGGTCTTAGTGATGAGAGTAGTTGGAGCAATATCACGGGAAGTGCTAATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAAGCCATTCTCGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGTCATTTTAGACTCTTGAAAAGGCTCGGATGCGGTGACATCGGTAGTGTTTATCTCTCGGAGCTAAGTGGGACTTGCTGTTACTTCGCTATGAAAGTAATGGATAAGGCGTCTCTTGCTATCAGGAAGAAGTTAACAAGAGCTCAAACTGAGAGGGAGATCTTGCAGTTACTGGATCATCCATTTTTGCCGACTTTGTATACACATTTTGAGACTGACAGATTCTGCTGCCTAGTAATGGAATATTGTCCTGGGGGAGATCTACATAGTTTGAGGCAACGACAACCGGGGAAGCACTTCTCTGAGTATGCTGCAAGGTTTTATGCAGCAGAAGTTCTATTGGCACTTGAATATCTTCACATGCTTGGAGTTGTCTATAGGGACTTGAAACCTGAGAATGTACTAGTTCGTGATGATGGCCACATAATGCTCTCAGATTTCGACCTTTCCCTAAGATGTGCAGTGTCACCCACCCTGATAAGAACCTCATACGATTCTGACCCATCGAAACGGGCATTTTGTGTCCAGCCTGCCTGTATTGAGCCGTCATCAGTTTGTATCCAACCCGCATGCTTTATTCCTCGACTCTTCCCTCAGAAAAACAAAAAGAAAAGTCTCAAACCTCGAAGTGAGCTAGGCTTGCAATCTAGCGCACTCCCTGAGCTTTTAGCGGAGCCTACTGACGCCCGTTCCATGTCCTTTGTTGGAACCCATGAATACCTAGCCCCTGAAATTATTAAAGGAGAGGGCCATGGAAGTGGTGTTGATTGGTGGACGTTTGGCATTTTCTTGCATGAACTTTTGTATGGAAAAACCCCATTCAAAGGCTCAGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTCAAGTTCCCAGAGTCTCCAGCTACCAGTTATGCAAGCCGGGATCTGATTCGAGGTTTACTGGTAAAGGAACCACAGAATCGGCTTGGAGTGAAGAGAGGTGCAACGGAGATCAAGCAGCATCCCTTTTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACTCCCCCAGAAGTGCCAAGACCAATGGAGGCTGAGCAGCCTAAATTTGTGGCAGTTGACGCAGCTGAGGTTTGTAGTAATAGCAGTAAGAAAATAGTCAAGGCAGATGTCGTGAAGTCCGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2103 44.79 MERIQDSKSLPLFLPIDMLPEPSGKFRALDHLFKAHEASSARLNSHSAKNVREVGRSITHPEIFVPTTRTLKQKSSLIGREELKTLKGSSRNLVEECGPSSFSGASHPPEPVDMDLMKTVYVPIGQNKSEAGCLMKSFSVKGLYLEDLPTKKSSSPEEPHDLGVLFSPFSVPRTSRNTDDASLLPPDSEEKECVWDASQPPSGNVSPLSSIDSTTISFVNSCGSTYRSDGMVSICESTKASVRGGDSHSLESAKTSISRASNSSGLSDESSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTCCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHSLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDSDPSKRAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKKSLKPRSELGLQSSALPELLAEPTDARSMSFVGTHEYLAPEIIKGEGHGSGVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQNRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAEQPKFVAVDAAEVCSNSSKKIVKADVVKSGGQYLDFEFF 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44503937 44506157 - evm.model.ptg000003l.824 HCH6g0968 546462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0968 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0968 700 Gene3D Phosphorylase Kinase; domain 1 306 391 - -
HCH6g0968 700 SUPERFAMILY Protein kinase-like (PK-like) 290 664 IPR011009 -
HCH6g0968 700 MobiDBLite consensus disorder prediction 242 285 - -
HCH6g0968 700 FunFam serine/threonine-protein kinase D6PK-like 534 657 - -
HCH6g0968 700 Pfam Protein kinase domain 309 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0968 700 Pfam Protein kinase domain 536 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0968 700 PANTHER FLIPPASE KINASE 1-RELATED 215 671 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH6g0968 700 CDD STKc_phototropin_like 306 658 - -
HCH6g0968 700 FunFam serine/threonine-protein kinase D6PK-like 392 459 - -
HCH6g0968 700 ProSiteProfiles Protein kinase domain profile. 308 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0968 700 SMART serkin_6 308 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0968 700 MobiDBLite consensus disorder prediction 242 281 - -
HCH6g0968 700 FunFam Serine/threonine-protein kinase D6PK-like 306 391 - -
HCH6g0968 700 Gene3D Transferase(Phosphotransferase) domain 1 534 657 - -
HCH6g0968 700 Gene3D Transferase(Phosphotransferase) domain 1 392 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1252 HCH-Chr2:54832835 HCH6g0968 HCH-Chr6:44503937 8.70E-111 dispersed
HCH3g0840 HCH-Chr3:6493464 HCH6g0968 HCH-Chr6:44503937 2.50E-97 dispersed
HCH6g0583 HCH-Chr6:34566752 HCH6g0968 HCH-Chr6:44503937 1.00E-96 dispersed
HCH6g0968 HCH-Chr6:44503937 HCH9g0115 HCH-Chr9:603573 1.10E-171 dispersed
HCH6g0968 HCH-Chr6:44503937 HCH3g1038 HCH-Chr3:14475731 1.00E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81583 PF00069 Pkinase 3.00E-36 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0968 - - - 0.0