Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0969 ATGGAGGGAACAGTGGTGGGATCGGATGTTCCAAACACAGAAACCTCGGAATCTGTGAAAACAAGTGGGCCAGCTCCGACGTCGCCTACGGCGGTGCAAGTGGCTGCTCCGCCGCCACCGGCGGTGAGCTCCACGATTCCGGGAAAGAAGAAAAGGGGTAGGCCGAGAAAGTATGGACCAGATGGAAAGATCAATATAGCTCTCTCACCTAAGCCGATATCATCCTCGCCGCCGGCCGCCGTGATTGACTTCTCGGTTGAGAAACGAGGGAAAGTACGGCCGACGAGTTCTCTCAGCAAAACCAAGTATGAAGTGGAGAATTTAGGTGAATGGGTACCATGCTCGGTAGGTGCTAATTTCACACCCCATATCATCACTGTCAATGCTGGTGAGGACGTTACGATGAAGATTCTCTCTTTTTCTCAACAAGGCCCTCGAGCTATCTGCATTCTCTCTGCAAATGGCGTGATATCAAGCGTCACACTTCGCCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTCGAGATATTGTCCTTATCGGGATCGTTCATGCCAAATGATACTGCAGGAACTAAAAGCAGATCTGGTGGAATGAGTGTTTCTTTAGCAAGTCCAGATGGACGTGTCGTAGGTGGTGGGGTTGCTGGTTTATTAGTAGCTGCAAGTCCTGTTCAAGTTGTCGTAGGAAGCTTTTTATCTGGGAACCAACATGAGCAAAAGCCTAAGAAGCCAAAACACGATGTCATATTACCAACTGCTGCTCTTCCAATCTCCAGCGCCGAACCAAAATCGTACATGACGACATCATCTTCATTCCGTGCCGAAACTTGGTCGCCACTGCCTCCAGATTTGAGAAGTCAACCAACTGATATTAATGTATCTTTAACCAGTGGCTAA 909 48.73 MEGTVVGSDVPNTETSESVKTSGPAPTSPTAVQVAAPPPPAVSSTIPGKKKRGRPRKYGPDGKINIALSPKPISSSPPAAVIDFSVEKRGKVRPTSSLSKTKYEVENLGEWVPCSVGANFTPHIITVNAGEDVTMKILSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDTAGTKSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDVILPTAALPISSAEPKSYMTTSSSFRAETWSPLPPDLRSQPTDINVSLTSG 302
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 44513468 44516947 + evm.model.ptg000003l.823 HCH6g0969 546463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0969 302 MobiDBLite consensus disorder prediction 264 302 - -
HCH6g0969 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 122 235 IPR005175 -
HCH6g0969 302 MobiDBLite consensus disorder prediction 1 70 - -
HCH6g0969 302 CDD DUF296 121 212 IPR005175 -
HCH6g0969 302 MobiDBLite consensus disorder prediction 265 302 - -
HCH6g0969 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 269 IPR039605 GO:0003680(InterPro)
HCH6g0969 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 119 241 - -
HCH6g0969 302 ProSiteProfiles PPC domain profile profile. 117 256 IPR005175 -
HCH6g0969 302 MobiDBLite consensus disorder prediction 8 29 - -
HCH6g0969 302 Gene3D - 122 251 - -
HCH6g0969 302 FunFam AT-hook motif nuclear-localized protein 1-like 122 252 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0969 HCH-Chr6:44513468 HCH7g1547 HCH-Chr7:47928116 1.50E-82 dispersed
HCH11g1149 HCH-Chr11:43720186 HCH6g0969 HCH-Chr6:44513468 1.30E-68 wgd
HCH5g0424 HCH-Chr5:2804270 HCH6g0969 HCH-Chr6:44513468 3.60E-122 wgd
HCH5g0750 HCH-Chr5:5464660 HCH6g0969 HCH-Chr6:44513468 1.30E-42 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0969 - - - 0.0