Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0969 | ATGGAGGGAACAGTGGTGGGATCGGATGTTCCAAACACAGAAACCTCGGAATCTGTGAAAACAAGTGGGCCAGCTCCGACGTCGCCTACGGCGGTGCAAGTGGCTGCTCCGCCGCCACCGGCGGTGAGCTCCACGATTCCGGGAAAGAAGAAAAGGGGTAGGCCGAGAAAGTATGGACCAGATGGAAAGATCAATATAGCTCTCTCACCTAAGCCGATATCATCCTCGCCGCCGGCCGCCGTGATTGACTTCTCGGTTGAGAAACGAGGGAAAGTACGGCCGACGAGTTCTCTCAGCAAAACCAAGTATGAAGTGGAGAATTTAGGTGAATGGGTACCATGCTCGGTAGGTGCTAATTTCACACCCCATATCATCACTGTCAATGCTGGTGAGGACGTTACGATGAAGATTCTCTCTTTTTCTCAACAAGGCCCTCGAGCTATCTGCATTCTCTCTGCAAATGGCGTGATATCAAGCGTCACACTTCGCCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTCGAGATATTGTCCTTATCGGGATCGTTCATGCCAAATGATACTGCAGGAACTAAAAGCAGATCTGGTGGAATGAGTGTTTCTTTAGCAAGTCCAGATGGACGTGTCGTAGGTGGTGGGGTTGCTGGTTTATTAGTAGCTGCAAGTCCTGTTCAAGTTGTCGTAGGAAGCTTTTTATCTGGGAACCAACATGAGCAAAAGCCTAAGAAGCCAAAACACGATGTCATATTACCAACTGCTGCTCTTCCAATCTCCAGCGCCGAACCAAAATCGTACATGACGACATCATCTTCATTCCGTGCCGAAACTTGGTCGCCACTGCCTCCAGATTTGAGAAGTCAACCAACTGATATTAATGTATCTTTAACCAGTGGCTAA | 909 | 48.73 | MEGTVVGSDVPNTETSESVKTSGPAPTSPTAVQVAAPPPPAVSSTIPGKKKRGRPRKYGPDGKINIALSPKPISSSPPAAVIDFSVEKRGKVRPTSSLSKTKYEVENLGEWVPCSVGANFTPHIITVNAGEDVTMKILSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDTAGTKSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDVILPTAALPISSAEPKSYMTTSSSFRAETWSPLPPDLRSQPTDINVSLTSG | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 44513468 | 44516947 | + | evm.model.ptg000003l.823 | HCH6g0969 | 546463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0969 | 302 | MobiDBLite | consensus disorder prediction | 264 | 302 | - | - | |
| HCH6g0969 | 302 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 122 | 235 | IPR005175 | - | |
| HCH6g0969 | 302 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| HCH6g0969 | 302 | CDD | DUF296 | 121 | 212 | IPR005175 | - | |
| HCH6g0969 | 302 | MobiDBLite | consensus disorder prediction | 265 | 302 | - | - | |
| HCH6g0969 | 302 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 18 | 269 | IPR039605 | GO:0003680(InterPro) | |
| HCH6g0969 | 302 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 119 | 241 | - | - | |
| HCH6g0969 | 302 | ProSiteProfiles | PPC domain profile profile. | 117 | 256 | IPR005175 | - | |
| HCH6g0969 | 302 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
| HCH6g0969 | 302 | Gene3D | - | 122 | 251 | - | - | |
| HCH6g0969 | 302 | FunFam | AT-hook motif nuclear-localized protein 1-like | 122 | 252 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g0969 | HCH-Chr6:44513468 | HCH7g1547 | HCH-Chr7:47928116 | 1.50E-82 | dispersed | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH6g0969 | HCH-Chr6:44513468 | 1.30E-68 | wgd | |
| HCH5g0424 | HCH-Chr5:2804270 | HCH6g0969 | HCH-Chr6:44513468 | 3.60E-122 | wgd | |
| HCH5g0750 | HCH-Chr5:5464660 | HCH6g0969 | HCH-Chr6:44513468 | 1.30E-42 | wgd |
Pathway information