Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0979 ATGATCGCAGTCACTAAATTTCAAAACCCATCTTTCAAATTACCTTTCCAAATATTAAATAATCCAAAACCCTATATCCAATTGCTTGAACATTTCCATACCGGAAAAAACCCAAATATCGCCGAAACCAGCGTCGCCATTTTCTGGGATTTAGACAATAAACCACCAAAATCCCTACCCCCTTATGAAGCTGCAATGAAGCTCAAGGCTGCCGTAGCTTCCTTCGGCACCGTCCGATACATGGCAGCGTATGCAAATCGCCATGCTTTTACCTACATTCCTCGAGAAGTTAGGGATCAGAGGAGAGAAAGGAAGTTGTTAAATCAATTAGAGAATAAGGGTTTGATTAAATCAGTGGAACCGTATCAATGTCGGGTTTGCGGTAGGAATTTCTATACTAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGCCTGAGCAAAAGAAGAGGTTGAATCAAATTGAATGTGCAAAGGGTTCTAGGAGAGTGAAATTGATTGCGAAGTTTTCGACGAAAATGTACAAGTATAGGAATGGTGCTAGGGAAGTTTTGACACCAAATGTAGGATATGGTTTGGCTGATGAGTTGAAGAGGGCTGGTTTTTTTGTTAAGAGTGTGTCTGATAAGCCTGAAGCCGCTGATGTTGGATTGAGGGATCATATGGTTGAGATTATGGATAGGAGGAGAGCTGAGTGTTTGGTTCTTGTATCGGACGATTCCGATTTCGTGAGTGTTTTGAAGGAGGCTAGATTGAGATGTGTTAAGACAGTTGTGGTGGGTGATATTGTTGATGGGGCATTGAAGAGGAATGCTGATGCTGGGTTTGTTTGGAAGGAGATTTTGATGGGGAAGGCGAAAAAGGAGGCGGTGTCGGTGGTCGGGAAATGGAAGGATCGAGATGTGTTGAAGAGGTTGGAATGGACATATAACCCTGAATTGGAGAAGGAAGTGTGTGATCTAGATGATGAAGATGATGGTGGTGATTTGCAGAATGGAGAAAGTGGTGCTTGGTGGAAACTTGACTCTGATTCTGATATTGTTTCTTCAGAATCATGTAAATGA 1068 41.67 MIAVTKFQNPSFKLPFQILNNPKPYIQLLEHFHTGKNPNIAETSVAIFWDLDNKPPKSLPPYEAAMKLKAAVASFGTVRYMAAYANRHAFTYIPREVRDQRRERKLLNQLENKGLIKSVEPYQCRVCGRNFYTNEKLVNHFKQIHEPEQKKRLNQIECAKGSRRVKLIAKFSTKMYKYRNGAREVLTPNVGYGLADELKRAGFFVKSVSDKPEAADVGLRDHMVEIMDRRRAECLVLVSDDSDFVSVLKEARLRCVKTVVVGDIVDGALKRNADAGFVWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPELEKEVCDLDDEDDGGDLQNGESGAWWKLDSDSDIVSSESCK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44598742 44599809 + evm.model.ptg000003l.813 HCH6g0979 546473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0979 355 Gene3D - 39 282 - -
HCH6g0979 355 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 40 351 - -
HCH6g0979 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 150 IPR013087 -
HCH6g0979 355 Pfam NYN domain 196 277 IPR021139 GO:0004540(InterPro)
HCH6g0979 355 Gene3D Classic Zinc Finger 122 184 - -
HCH6g0979 355 SUPERFAMILY beta-beta-alpha zinc fingers 119 148 IPR036236 -
HCH6g0979 355 CDD PIN_LabA-like 132 263 - -
HCH6g0979 355 ProSitePatterns Zinc finger C2H2 type domain signature. 124 145 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0608 HCH-Chr12:3575068 HCH6g0979 HCH-Chr6:44598742 3.10E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33733 PF01936 NYN 4.50E-08 CL0280 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0979 - - - 0.0