Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0989 ATGTCATCATCTTCCCTTCCTAGTCCTACTACCTTATCATCGCTTCCTCATTCGGAGCAGCTCTGCTACGTGCATTGCAACATCTGTGACACCATTTTAGCGGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACAGTCAGATGTGGGCACTGCACAAATCTTCTCCCTGTGAACTTGCGTTTGCCTTCATCACCAAATCAGTTTCAGTTTCACACCCATTTCTCTCACTCTCACTCACCTGCTTCTTTTTTCTCTCCTAATCCCCACAGTCTAATGGAAGAAATTTCAAATCCAAATCCAAACTTTCTCATCAACCAAACAGCTGCAAATGATTTCATTATGCCAGTTCGTGTAGCTAATGAGATTCCAAGACCCCCTCCAAGTATAACTAGACCACCAGAGAAAAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGTATCAAGGCTGTGAATCCCGATATATCCCACAGAGAGGCTTTCAGTGCTGCGGCTAAGAATTGGGCCCACTTTCCTCACATTCATTTTGGACTCCTGCCTGATCAGACTGCCAAAAAGACCATTGAGCAGGAAGGAGATGATGTTATGATGAAAGATGGTCGATTTTTCACTTCAAATAATATGGGAGTTTCCCCTTTTTAA 666 43.99 MSSSSLPSPTTLSSLPHSEQLCYVHCNICDTILAVSVPCSSLFKTVTVRCGHCTNLLPVNLRLPSSPNQFQFHTHFSHSHSPASFFSPNPHSLMEEISNPNPNFLINQTAANDFIMPVRVANEIPRPPPSITRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLLPDQTAKKTIEQEGDDVMMKDGRFFTSNNMGVSPF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44653049 44656967 - evm.model.ptg000003l.803 HCH6g0989 546483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0989 221 SUPERFAMILY HMG-box 124 179 IPR036910 -
HCH6g0989 221 CDD HMG-box_SF 140 176 - -
HCH6g0989 221 Gene3D High mobility group box domain 131 198 IPR036910 -
HCH6g0989 221 PANTHER PROTEIN YABBY 6-RELATED 17 197 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
HCH6g0989 221 FunFam Axial regulator YABBY 131 201 - -
HCH6g0989 221 Pfam YABBY protein 18 186 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0989 HCH-Chr6:44653049 HCH8g0848 HCH-Chr8:44945370 2.80E-38 dispersed
HCH5g0398 HCH-Chr5:2620127 HCH6g0989 HCH-Chr6:44653049 3.90E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33735 PF04690 YABBY 1.10E-69 CL0114 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0989 K25796 - vvi:100267708 294.278