Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0989 ATGTCATCATCTTCCCTTCCTAGTCCTACTACCTTATCATCGCTTCCTCATTCGGAGCAGCTCTGCTACGTGCATTGCAACATCTGTGACACCATTTTAGCGGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACAGTCAGATGTGGGCACTGCACAAATCTTCTCCCTGTGAACTTGCGTTTGCCTTCATCACCAAATCAGTTTCAGTTTCACACCCATTTCTCTCACTCTCACTCACCTGCTTCTTTTTTCTCTCCTAATCCCCACAGTCTAATGGAAGAAATTTCAAATCCAAATCCAAACTTTCTCATCAACCAAACAGCTGCAAATGATTTCATTATGCCAGTTCGTGTAGCTAATGAGATTCCAAGACCCCCTCCAAGTATAACTAGACCACCAGAGAAAAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGTATCAAGGCTGTGAATCCCGATATATCCCACAGAGAGGCTTTCAGTGCTGCGGCTAAGAATTGGGCCCACTTTCCTCACATTCATTTTGGACTCCTGCCTGATCAGACTGCCAAAAAGACCATTGAGCAGGAAGGAGATGATGTTATGATGAAAGATGGTCGATTTTTCACTTCAAATAATATGGGAGTTTCCCCTTTTTAA 666 43.99 MSSSSLPSPTTLSSLPHSEQLCYVHCNICDTILAVSVPCSSLFKTVTVRCGHCTNLLPVNLRLPSSPNQFQFHTHFSHSHSPASFFSPNPHSLMEEISNPNPNFLINQTAANDFIMPVRVANEIPRPPPSITRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLLPDQTAKKTIEQEGDDVMMKDGRFFTSNNMGVSPF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44653049 44656967 - evm.model.ptg000003l.803 HCH6g0989 546483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0989 221 SUPERFAMILY HMG-box 124 179 IPR036910 -
HCH6g0989 221 CDD HMG-box_SF 140 176 - -
HCH6g0989 221 Gene3D High mobility group box domain 131 198 IPR036910 -
HCH6g0989 221 PANTHER PROTEIN YABBY 6-RELATED 17 197 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
HCH6g0989 221 FunFam Axial regulator YABBY 131 201 - -
HCH6g0989 221 Pfam YABBY protein 18 186 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0989 K25796 - - vvi:100267708 294.278
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0989 HCH-Chr6:44653049 HCH8g0848 HCH-Chr8:44945370 2.80E-38 dispersed
HCH5g0398 HCH-Chr5:2620127 HCH6g0989 HCH-Chr6:44653049 3.90E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33735 PF04690 YABBY 1.10E-69 CL0114 HCH TF