Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0997 ATGGTTCAAGCATCAGGACAATCCAAATTACGATGGGGGGAGCTTGACGATGACGATGGCGATCTCGATTTTCTCCTCCCACCCAAACAAATCATCGGTCCAGACTCTAACGGATTGAAGAAAATAATTGAATATCAATTCAACGAAGATGGAAATAAAGTCAAAATCACGACCACCACGCGCACTCGTAAACTGGCTAATGCTCGATTGAGTAAACGCGCCGTCGAGCGCCGGTCTTGGCCTAAATTCGGAGATGCTGTTCATGAAGATGTTGGAAGTAGGCTTACTATGGTTTCCACTGAGGAGATTCTCTTGGAGCGCCCTCGTCCTCCTGGTAGCAAAGCAGAAGAGGTTAAGGTTGCAGGAGATCCTTTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGATCTGGCACCGCAATCTGATGGAACGGATAAGAGTGCTGCACCCGATTCTACAACTTCTGCTCCTAGCACAACTAAGGGAGCATATGTTCCTCCAGGTATGAGAGCTGGGGCAGAGAGGACTGTAACTGACATGAGACGTAGGAATGATGAAAATTCCGTTCGTGTCACAAACCTTTCAGAGGACACAAGAGAGCCAGACCTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAGAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGTGACGAGGCCCAAAGAGCAATTAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTCGAGTGGGCGACTCCAAGGGCGACTTGA 867 47.17 MVQASGQSKLRWGELDDDDGDLDFLLPPKQIIGPDSNGLKKIIEYQFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRPPGSKAEEVKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQSDGTDKSAAPDSTTSAPSTTKGAYVPPGMRAGAERTVTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNRDEAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44722518 44724510 - evm.model.ptg000003l.795 HCH6g0997 546491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0997 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
HCH6g0997 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
HCH6g0997 288 SUPERFAMILY RNA-binding domain, RBD 204 286 IPR035979 GO:0003676(InterPro)
HCH6g0997 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
HCH6g0997 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
HCH6g0997 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH6g0997 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
HCH6g0997 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
HCH6g0997 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
HCH6g0997 288 Gene3D - 154 288 IPR012677 -
HCH6g0997 288 CDD eIF3G 37 156 IPR024675 -
HCH6g0997 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH6g0997 288 MobiDBLite consensus disorder prediction 147 189 - -
HCH6g0997 288 MobiDBLite consensus disorder prediction 165 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1865 HCH-Chr4:49073318 HCH6g0997 HCH-Chr6:44722518 2.90E-09 dispersed
HCH6g0997 HCH-Chr6:44722518 HCH9g0339 HCH-Chr9:2103910 2.60E-161 dispersed
HCH6g0997 HCH-Chr6:44722518 HCH11g0348 HCH-Chr11:3298268 3.60E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0997 K03248 - csv:101207022 520.005