Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1008 ATGAGGAGTATTCCCTTTCATTTTCAGGGGAAGGGGGAGCTGGAAATTTCTGCTAATTTTTCTTCTCAGATTTGTTCTACTTTTCCTCCTGATAAGTGGAATAAAAAACAAGAACAAGAACAGGAACAGGAGGAGGAAGAAGAAGAAATTTGCTATTTTTTCTGTGATAATAATTTATCTAAAGAACCCACTTCTGTTCTTCATATGAGAAGTCCTAGCCCTCCTACATCAGCTTCAACTCTCTCTTCTTCTTTCGGCGGAGGTTTAACGGAAAACACCGGCAGCGGTTGCGTTCCTTCACTGCCGCCGGAGACACCACCCACTTCAGGGATTGAACTATTCTGTGGAGGAGGAATTACTGCTACTGCTGCTGCTGCTACTAATATCTTTCATGGTGGATTTGAAAGATGTGGGGTTGGATTGGAAGATTTAGAGAATATGTGGTCGGAAACTGCTGGTCCAGAACAGTCGTTTTTTCGATGGATCTCCGGTGATGTGGAAGATCCAACTTTAGGTATTAAAAATCTTATGCAAACTGTGAACTTGCCCTATGATTTGGATGGCAATGCCGGTATGGGAATCGTCGATCAGGGTTCGGCATTCGACCCGTCGAATGTCGCTGGAGCTGCTGCTGCTTCGATTGCTGGTAATGTTCTCATGAATATCAATCCAAATTTGTCATTTCCTAGTCCTGTTTGTACTGGGTTTTCGGATAATAATAATAACAATAATGGGAAGTTTTTAAGTAGAGGTTCTTCTGGGGCTGTTAATTACAAGACCAGTCCTGGTTTGGGGCAAAACACTAGGAATATGCAAAGTCCTTTCTTTTGTGGTTCTGCTGAAAATGTTGTTTTGCCAGTTTCTGGTATGGTTTATCCACAGCAGCTGCAACCATTTGAGAATATAGAGGAGAAGCCTCAGAATTTAAATCCTCAGGTTTTGATAAGCCAGCATCAGCAGCCTCTAAATCCCAACTTTTTTGTGCCATTGACATTTGGGCAACAAGAACAGCAACTCCAGCCTCAACTGAAGAGGCACAATTCCAGTGGAATAGACCCGAACGCTCAGATCCCGAAAGTTCCATTTATGGATCCAGGGAATGAGATTTTCCTGAGAAACCATCAGTTGCAGCAGCAGCAGCAGCATCTGGGGTTTCCTCCAAGTTTGCAGTTTCTTCCTCTGCAGAAGTCATCTTCACCGAAGCAGAAAGTTGTAGGACTTGGCGAAGAAATGGCGTATCACAACAATCCCCCACAGCAGCATGCTTTGCTAGACCAGCTCTACAAGGCAGCCGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCATAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAACTGCTCCTCCTTATGAACAACCCAGTTAACCCTCCTCCACCTCGCTGCCCTACACCGTTTGATGTAATCTTCAAGATGGGTGCTTACAAAGTCTTTTCAGAAATTTCACCTCTCATTCAGTTTGTGAATTTCACCTGCAATCAGGCACTGCTTGAGGCCCTTGATGATATTGATCGAATTCATATTGTTGATTTTGATATTGGATTTGGTGCTCAGTGGGCTTCCTTTATGCAAGAATTATCATTAAGAAATAGAGGAGCACCGTCGTTAAAAATCACTGCCTTTGCCTCTCCCTCCACTCAACATCCGATTGAACTAGGGCTTATGCGTGAAAATCTTACTCAGTTTGCCAACGACATCGGAATAAGTTTTGAGTTTGAAGTGGTGAACTTTGACTCTTTGAACCAGAACTCCTTTTCCTTACCATTCTCTAGACCAAATGAAAACGAGGCTATTGCAGTAAATTTCCCTCTATGGTCCTCATCAAATCAACCAGCTCTGCTTCCTTCTCTCCTCCGCTTCATCAAGCAACTCTCACCAAAAATTGTGGTATCATTGGACCGAGGGTGTGATCGAAGTGACCTCCCTTTTCCTCAGCACATGCTTCAGGCACTTCACTCCTACATTAACCTCTTGGAATCTCTGGATGCTATAAATATGAATTCGGATGCTGTGAACAAGATTGAGAGGTTTCTTTTGCAACCGAGAATTGAAAGCACTGTTCTGGGGAGGCTTCGAGCACCTGAAAGAATGCCCCTTTGGAAAACACTCTTTGCCTCAGCTGGGTTTACCCCAGTAACATTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCCAAGAGAACTTCTGTAAGGGGATTTCATGTCGAGAAACGCCAGGCTTCCCTAGTTCTATGCTGGCAGCGCAAGGAGCTCATATCCGCTTCAGCTTGGAGGTGTTGA 2361 44.56 MRSIPFHFQGKGELEISANFSSQICSTFPPDKWNKKQEQEQEQEEEEEEICYFFCDNNLSKEPTSVLHMRSPSPPTSASTLSSSFGGGLTENTGSGCVPSLPPETPPTSGIELFCGGGITATAAAATNIFHGGFERCGVGLEDLENMWSETAGPEQSFFRWISGDVEDPTLGIKNLMQTVNLPYDLDGNAGMGIVDQGSAFDPSNVAGAAAASIAGNVLMNINPNLSFPSPVCTGFSDNNNNNNGKFLSRGSSGAVNYKTSPGLGQNTRNMQSPFFCGSAENVVLPVSGMVYPQQLQPFENIEEKPQNLNPQVLISQHQQPLNPNFFVPLTFGQQEQQLQPQLKRHNSSGIDPNAQIPKVPFMDPGNEIFLRNHQLQQQQQHLGFPPSLQFLPLQKSSSPKQKVVGLGEEMAYHNNPPQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDIDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTQHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFSLPFSRPNENEAIAVNFPLWSSSNQPALLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALHSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRKELISASAWRC 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44860721 44863081 + evm.model.ptg000003l.784 HCH6g1008 546502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1008 786 MobiDBLite consensus disorder prediction 64 85 - -
HCH6g1008 786 ProSiteProfiles GRAS family profile. 414 785 IPR005202 -
HCH6g1008 786 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 399 784 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH6g1008 786 Pfam GRAS domain family 424 785 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1078 HCH-Chr13:34809563 HCH6g1008 HCH-Chr6:44860721 1.60E-151 dispersed
HCH13g1280 HCH-Chr13:40767643 HCH6g1008 HCH-Chr6:44860721 3.60E-61 dispersed
HCH6g1008 HCH-Chr6:44860721 HCH8g0794 HCH-Chr8:44538125 1.00E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33736 PF03514 GRAS 1.40E-94 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1008 K27747 - csv:101218630 1147.11