Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1036 ATGATGATTGGAAAAGAAGATCTGGGTCTCAGTCTTAGCTTGAGTTTTCCTCAAAATCATTGTAATCGCTCTAATTTGCAGCTTAATCTCATGCCTTCTTTGCTTCCTAATAATTCCTCTTGGAATAATGACAACTCCTTCCTTTCTTCCTCAGATCGGACCTCCGAAACGGGCCGGGTTGAAACCCGATCTCTACTCCGAGGGATCGACGTGAACCGGATGCCATCCACGGTCGATTGCGAAGAGGAAGCGGCGATGTCGAGCCCTAATAGTACGGTCTCGAGCGTCAGTGGAAAACGAAGCGAAAGAGAAACAAATGGCGACGGCGATGACCACGACCACGACGGCGATGGCGACGGTTCTCGCGGAATCAGCGACGAAGAAGATGGAGAAACCTCGAGAAAGAAACTCCGCCTCACGAAAGACCAATCGGCGATCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCCAAACAAAAACTGGCGTTGGCTAAGCAATTAGGGCTTCGGCCTAGACAAGTGGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACAGAGGTGGATTGTGAGTTTCTAAAGAGATGTTGCGAGAATCTGACGGAGGAGAATAGGCGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTGAAACTTTCCCCTCAATTCTACATGCAGATGGCCCCACCTACCACTCTCACCATGTGCCCCTCGTGTGAGCGAGTCGCGGTCCCACCTTCCACGTCAGCTCCCCGAAACCACGCACAGATGGGCCAGGCCCACTCTCGGCCCATTCATATCAACCCATGGGCTTCTGGAATTCCCACCCGGCCCTTCGATGCATTACACCCTCGATCGTAA 879 50.51 MMIGKEDLGLSLSLSFPQNHCNRSNLQLNLMPSLLPNNSSWNNDNSFLSSSDRTSETGRVETRSLLRGIDVNRMPSTVDCEEEAAMSSPNSTVSSVSGKRSERETNGDGDDHDHDGDGDGSRGISDEEDGETSRKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMAPPTTLTMCPSCERVAVPPSTSAPRNHAQMGQAHSRPIHINPWASGIPTRPFDALHPRS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45096222 45097534 + evm.model.ptg000003l.756 HCH6g1036 546530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1036 292 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1036 292 MobiDBLite consensus disorder prediction 101 138 - -
HCH6g1036 292 MobiDBLite consensus disorder prediction 46 138 - -
HCH6g1036 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 260 IPR050762 -
HCH6g1036 292 MobiDBLite consensus disorder prediction 253 292 - -
HCH6g1036 292 SUPERFAMILY Homeodomain-like 120 191 IPR009057 -
HCH6g1036 292 SMART halz 190 233 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1036 292 Coils Coil 189 226 - -
HCH6g1036 292 FunFam Homeobox-leucine zipper protein 18 121 195 - -
HCH6g1036 292 Pfam HD-ZIP protein N terminus 2 104 IPR006712 GO:0005634(InterPro)
HCH6g1036 292 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH6g1036 292 CDD homeodomain 134 191 IPR001356 GO:0003677(InterPro)
HCH6g1036 292 SMART HOX_1 132 194 IPR001356 GO:0003677(InterPro)
HCH6g1036 292 Gene3D - 138 188 - -
HCH6g1036 292 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677(InterPro)
HCH6g1036 292 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677(InterPro)
HCH6g1036 292 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677(InterPro)
HCH6g1036 292 Pfam Homeodomain 134 188 IPR001356 GO:0003677(InterPro)
HCH6g1036 292 MobiDBLite consensus disorder prediction 83 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0554 HCH-Chr11:7771367 HCH6g1036 HCH-Chr6:45096222 9.80E-57 dispersed
HCH14g0398 HCH-Chr14:33013592 HCH6g1036 HCH-Chr6:45096222 1.60E-51 dispersed
HCH4g1224 HCH-Chr4:8310070 HCH6g1036 HCH-Chr6:45096222 3.80E-49 dispersed
HCH6g0499 HCH-Chr6:18226695 HCH6g1036 HCH-Chr6:45096222 5.30E-49 dispersed
HCH6g1036 HCH-Chr6:45096222 HCH8g1078 HCH-Chr8:46647974 1.50E-39 dispersed
HCH7g1755 HCH-Chr7:49218164 HCH6g1036 HCH-Chr6:45096222 4.70E-73 transposed
HCH14g0466 HCH-Chr14:33718979 HCH6g1036 HCH-Chr6:45096222 6.50E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33742 PF04618 HD-ZIP_N 4.30E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1036 K09338 - vvi:100246436 380.948