Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1038 ATGTATATTGAGGAATTGGAAGAAGGGGAGTTGCAGAATGGGGAAGAAGGGGATTGTAATTCAAATCCTATTGTTGGTAGTTTTGAGAGTCAAAGCATCATTGTTTCTGATGTAAAAAGGGTTTTTGTTGGAGTTGGGGCTCGTGTGCTTTTCTACCCAACTTTGTTTTACAATGTTTTCAGAAATAAGATTCAGACCGAGTTTCGGTGGTGGGATAAAGTTGATGAGTTTATATTGTTAGGTGCTGTTCCGTTCCCTGCTGATGTTCCTCGCTTAAAGGAGGCCGGTGTTCGAGGAGTGATTACACTGAATGAGCCTTACGAGACTTTGGTTCCTTCAACTCTATATCGTGATCATGGCATTGATCATCTGACTATCCCAACTAGAGATTATTGCTTTGCACCTTTATTGAGTGATATTTTTGTTGCTGTAAATTTCATCCATGAAAATGCATCGCGTGGACAAACTACGTATGTTCATTGTAAAGCTGGACGAGGGCGTAGTACGACCATTGTTATATGCTATCTGGTGCAATACAAGCATATGACACCGGATGCAGCTTATAATCATATCAAGTCAATCAGGTCTAGGGTGCTATTAGCGTCATCACAGTGGCAGGCTGTCCTGGAATTCTATCGCCTGAAGGTGCAAAAGGATGTTTCCTGCTCCCACATGGATGATCTAGGAAAGAAATTACAGGGATCATCACATGATCTTGTTACATTCGATGATAGTTCTGTAGTTCTGGTATCAGAATCCGATCTTGAAGGATATCACTGGAGCAGCAACCAAAGTGACATTGATGATATCTGGGCAGATTTAAGTGTGGTCTGTAGAGTTCGAGTTGCTGGTCAGGCAGCTCTGACTCGAATCTCATGCATGTGGCTTCGTTATCAAACAAAACACCATGGCCAGAAGATTTCAGAAGAGGATATAGGGGTCGGAAATGGATGTTCACTCGGTGCTACTCATTTGGAAGGCATCAGTATGGACATCCATGTCTATTGA 1008 42.26 MYIEELEEGELQNGEEGDCNSNPIVGSFESQSIIVSDVKRVFVGVGARVLFYPTLFYNVFRNKIQTEFRWWDKVDEFILLGAVPFPADVPRLKEAGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDIFVAVNFIHENASRGQTTYVHCKAGRGRSTTIVICYLVQYKHMTPDAAYNHIKSIRSRVLLASSQWQAVLEFYRLKVQKDVSCSHMDDLGKKLQGSSHDLVTFDDSSVVLVSESDLEGYHWSSNQSDIDDIWADLSVVCRVRVAGQAALTRISCMWLRYQTKHHGQKISEEDIGVGNGCSLGATHLEGISMDIHVY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45109806 45112758 + evm.model.ptg000003l.754 HCH6g1038 546532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1038 335 Pfam Dual specificity phosphatase, catalytic domain 114 213 IPR000340 GO:0016311(InterPro)
HCH6g1038 335 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 214 IPR029021 -
HCH6g1038 335 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 206 IPR000387 GO:0016311(InterPro)
HCH6g1038 335 SMART dsp_5 73 214 IPR020422 GO:0006470(InterPro)
HCH6g1038 335 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
HCH6g1038 335 Gene3D Protein tyrosine phosphatase superfamily 70 219 IPR029021 -
HCH6g1038 335 FunFam Dual specificity phosphatase domain protein 70 217 - -
HCH6g1038 335 CDD PTPMT1 70 213 IPR044596 GO:0004721(InterPro)
HCH6g1038 335 ProSitePatterns Tyrosine specific protein phosphatases active site. 159 169 IPR016130 GO:0016311(InterPro)
HCH6g1038 335 ProSiteProfiles Dual specificity protein phosphatase domain profile. 70 217 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0513 HCH-Chr10:4150260 HCH6g1038 HCH-Chr6:45109806 1.30E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1038 - - - 0.0