Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1043 ATGATGTACGGACAGAGTAATATGAATGATTCAATTTCTGATTTTGTTCTTCTGGAATCGATACGTTGGCATTTATTGGGCGATTCGGACCAGGCTCAGCGTGTTTCGGGTACTGGGCCTGTTTTCTGTCGGAGCTCCAGTTTCGGAAGCCTGTACCCGTGTTTGACTGAGAATTGGGGGGATTTGCCTCTCAAAGAAGATGATTCTGAGGACATGGTTCTCGCCGGAGTTCTTCGTGACGCCGTTAGAGTTGGTTGGGTTCCTTCTCTCACTTCTTGTCCCTCGCCTGAAAGTTTTAATTTTGATTTTCCGATAGTCAAACCAGAGCCGGAGATTCTTCCCACGGAGAATCAGTTATCGCAATTTAAGGAGCTGTCGGAAAAGAAGGTGGCTACGATGCCGTTGCCGATGCCGGCTGTGGTTCCGGCGAAGGGGAAGCATTACCGCGGCGTGAGGCAACGGCCTTGGGGGAAGTTCGCGGCGGAGATTCGAGACCCGGCCAAGAACGGAGCTCGGGTTTGGCTCGGGACTTTCGAAACGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCTTACCGTATGCGCGGCTCGAAAGCTCTACTCAATTTCCCTCTTCGGGTTAACTCCGGTGAACCCGACCCAGTTAGAGTGACATCGAAGCGGTCTTCGCCTCGATCATCACCGGAGCCTTCTTCGTCGTCTTCAACCGACAGCGGATCGCTGAAGAGGCGGAAGAAGGCAGACGGCTCGGCGGCTCGAGCCGGGTCAGAATTGATAAATGTAATGCAAGTGGAAGCTGACGTGGCAAAGTGTACAAGTGGTCAGCAATTATTGGTGAACTAG 846 52.72 MMYGQSNMNDSISDFVLLESIRWHLLGDSDQAQRVSGTGPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVRVGWVPSLTSCPSPESFNFDFPIVKPEPEILPTENQLSQFKELSEKKVATMPLPMPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPSSSSSTDSGSLKRRKKADGSAARAGSELINVMQVEADVAKCTSGQQLLVN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45154510 45155355 + evm.model.ptg000003l.749 HCH6g1043 546537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1043 281 SMART rav1_2 147 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 Pfam AP2 domain 147 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 MobiDBLite consensus disorder prediction 216 239 - -
HCH6g1043 281 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 MobiDBLite consensus disorder prediction 208 257 - -
HCH6g1043 281 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 PANTHER DNA-BINDING DOMAIN 124 237 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH6g1043 281 FunFam Ethylene-responsive transcription factor 2 146 206 - -
HCH6g1043 281 CDD AP2 146 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1043 281 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0337 HCH-Chr5:2237797 HCH6g1043 HCH-Chr6:45154510 4.20E-84 dispersed
HCH5g0676 HCH-Chr5:4901637 HCH6g1043 HCH-Chr6:45154510 1.60E-41 dispersed
HCH6g1043 HCH-Chr6:45154510 HCH7g1792 HCH-Chr7:49504042 1.30E-27 dispersed
HCH6g1042 HCH-Chr6:45136959 HCH6g1043 HCH-Chr6:45154510 3.70E-26 tandem
HCH6g1043 HCH-Chr6:45154510 HCH6g1416 HCH-Chr6:47977714 6.00E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33744 PF00847 AP2 1.20E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1043 K09286 - csv:101203663 344.354