Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1049 ATGTGCCATGATAACTCCCACACACATTCTTTAGAAGAGGCAACTACAGCTGAAGATAGTCTCCTAATATATTGCAAACCAGTTGAATTATACAACATTCTTCATCTTCGTGCTCTTCACAATCCATCTTTTCTTCGGCGATGTTTGCTATACAAGGTACAGGCTAGACGAAAAGAGAGGTTGAGGACTGGAGTTGTAATTTTCAACTACAGGGACTACAACAACATAGTACGAAAGACTGAAGTGACTGAAGACTTCTCATGTCCATTTTGTTTGATGCAATGTGCAAGCTTTAAGGGTTTGCGCTACCACTTGTGCTCTTCACACGATATGTTCAGCTTTGAATACTGGGTGACTGAAGAATATCAGGCAGTGAATGTCTCTGTGAAAATTGATGTATTTAGATCTGAGACTGTTGCAGATGGAGTAGAACCACAACTACATACTTTTTTCTTCTGCTCAAGGCCACGAAAACGAAAGTCAAAGAACTCTGTTCAATATGGGAAGTATGTGCAGTTCTTGGAGATGGATACACGTAGACCTGCTATAGAAGAAAGGCACAAGGGACTTAATGGGCACAATGTTGATGGTGTATCCTGTGAAAAAGAGGCCTCCCAGTCATTCCCCACCGAGACTTATTTGCAGAATGCACGGCGAGAAGGAGACAATTTCGCTCTTGAATGTCTTACCCCTATGGAGTGCATTGAACGGGTTGCATCCAGCTCCAACATTCCTGTAGCTTCAATTGCTATCAATCAAGTAGAATGTTACAAATTACTGTCTGGAAGTGATCCTGTACAACCAGCTAAAGCAAGGAAATTAACAGTAGAACGAGACCCAAGAAACCGCATGCTCTTGCAGAAACGGCAGTTTTATCACTCTCACAGAGTTCAGCCTATGGCACTAGATAAAGTACTATCAGACAAAGATAGCGAGGATGAAGTTGATGATGACATTGCGGATTTTGAAGATCGAAGGATGCTTGATGATTTTGTGGATGTCACCAAAGATGAAAAGCGGCTTATGCATCTATGGAACTCCTTCGTGAGAAAGCAAAGGGTGCTAGCTGATGGTCATGTTCCCTGGGCATGCGAAGCATTTTCAAAACTTCATGGACAAGAGCTTGTCTCATCCTCGGCTCTCTTTTGGTGTTGGAGGTTATTCATGATCAAGCTCTGGAATCATGGTCTTCTTGATGCCTCCACCATGAACAACTGTAATTTAACTCTTGAAGGATTCAAAGATGAGGGTTCCGACGCAACAAACAACTGCAGAAGAGATGATGATTAG 1290 42.33 MCHDNSHTHSLEEATTAEDSLLIYCKPVELYNILHLRALHNPSFLRRCLLYKVQARRKERLRTGVVIFNYRDYNNIVRKTEVTEDFSCPFCLMQCASFKGLRYHLCSSHDMFSFEYWVTEEYQAVNVSVKIDVFRSETVADGVEPQLHTFFFCSRPRKRKSKNSVQYGKYVQFLEMDTRRPAIEERHKGLNGHNVDGVSCEKEASQSFPTETYLQNARREGDNFALECLTPMECIERVASSSNIPVASIAINQVECYKLLSGSDPVQPAKARKLTVERDPRNRMLLQKRQFYHSHRVQPMALDKVLSDKDSEDEVDDDIADFEDRRMLDDFVDVTKDEKRLMHLWNSFVRKQRVLADGHVPWACEAFSKLHGQELVSSSALFWCWRLFMIKLWNHGLLDASTMNNCNLTLEGFKDEGSDATNNCRRDDD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45188375 45198478 - evm.model.ptg000003l.743 HCH6g1049 546543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1049 429 CDD VEFS-box_EMF2-like 286 412 - -
HCH6g1049 429 CDD ZnB-Zn_EMF2-like 12 134 - -
HCH6g1049 429 Pfam VEFS-Box of polycomb protein 278 407 IPR019135 -
HCH6g1049 429 PANTHER POLYCOMB GROUP PROTEIN 8 60 - GO:0005634(PANTHER)|GO:0031490(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1034 HCH-Chr11:41868031 HCH6g1049 HCH-Chr6:45188375 6.90E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1049 - - - 0.0