Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1060 ATGGGCAAGCAAGGGCCTTGCTGTCACTGTGGAGTTACAAGTACACCACTTTGGCGCAATGGGCCTCCTGAGAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACAAAGCTATCTCTAGATAACTATACTCCTTTACATGCTCGGGCAGAACCGGATGAGTATGGTGATAAAAGGATTTCTAGGTATAGGAACTTGCCGATATATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAACACAAAGACAATGGAGTTGTGGTAGGGGTTGTCCCTGATCATCCTCAGAGCTTCCATAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCAAACTCTGAGAGTTGTGCTCAATTTGGTGGTGCGGATGCCAGTGATTTGACAGGTCCTGCACAGTCAATGGTGTGGGAAGCAATGGTGCCTTCTAGAAAGAGAACCTGTGTCGGTCGTCAAAAGCCTTCTCCAGTTGAGAAACTCACTAAAGATCTTTATACAATTTTACGTGAACAGCAATCTTATTTCTCTGGATCTTCAGAGGAGGATCTGCTTTTTGAGAGGGAAACTCCAATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCGAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCACTGTCAGTTGATAATAAACAGTTCTCTGTCAATGAGGCTTATTCAGAGTCTTCTATCCTTCCTGCACACAGTGAAACTGATAACAATGTTGTAAACTTTTCAACTTCTGGATTTGGGAAAAAGCACTCTAATGGGCAGGGGCTGTTGCAGGAGCAAATCAAATGGGACAAGGCTCAGGGAAAATTGCAACCACTGGGAAATCATGATTCTCCTCTGTGTCATATAGATCTAACTGACATTCTAAACTTTGGAGAGTTTATGAAGCAATTGACAAATGAAGAGCAACGACAATTAATGAAGTTTCTGCCTTCTGTTGATGCTGAAGAGCTTCCATACAGCTTGAATAGATTGTTTGAAAGCCCTCAGTTCGAGGAGAATTTAAATTCTTTTAAGCAGCTGCTCGCTGAAGGAGTCTTTGATTTCTCCTTTCCTGGTGTAAAGACAGAAGACTGCAAGACCTTAAGACGACTTGTGCTTTCCAATTTTTCAAAATCGAAATGGGTGGAACAATATCATATACTTAAGAAATGTAATAGTGAAGAATCTGTTGTTCAAGGTCCTGCTGCAGCATCAAGTAGTTCCATGAATGCAAAGAAACTGCTTGAGGATCTAAACAAGAAAAATTCAGAAACAAAGACTACTATGAAGAGTCCGAAAGGGGTGATAGCGAAGACAAGCATGGAAAACAAGGAACTCATTGATAGTGACGGTTCTTGCTTTAGTCCAAGACGTTTATTTGCTTTGCCTACTGATGGAGGTTCCTTCATGCTGGAATCTTTGCATTTTGAAGATGAAAATTCTGACCATGATCTACTGCTGGATGTGAGATCAAACAGCTCCTTCCCACAAGCAGAACTCCTCCACCCAGCCCTAGCTTTTAGTGGTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCCGCATTTTATCCGTTACTGA 1620 42.22 MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKLSLDNYTPLHARAEPDEYGDKRISRYRNLPIYKNKEVKLLKRKQHKDNGVVVGVVPDHPQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPAQSMVWEAMVPSRKRTCVGRQKPSPVEKLTKDLYTILREQQSYFSGSSEEDLLFERETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQFSVNEAYSESSILPAHSETDNNVVNFSTSGFGKKHSNGQGLLQEQIKWDKAQGKLQPLGNHDSPLCHIDLTDILNFGEFMKQLTNEEQRQLMKFLPSVDAEELPYSLNRLFESPQFEENLNSFKQLLAEGVFDFSFPGVKTEDCKTLRRLVLSNFSKSKWVEQYHILKKCNSEESVVQGPAAASSSSMNAKKLLEDLNKKNSETKTTMKSPKGVIAKTSMENKELIDSDGSCFSPRRLFALPTDGGSFMLESLHFEDENSDHDLLLDVRSNSSFPQAELLHPALAFSGQQASNSSSSVNPHFIRY 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45259612 45266713 + evm.model.ptg000003l.732 HCH6g1060 546554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1060 539 Gene3D - 290 384 IPR038108 -
HCH6g1060 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 370 IPR044589 -
HCH6g1060 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 33 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 CDD ZnF_GATA 6 54 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 Pfam GATA zinc finger 7 39 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
HCH6g1060 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 MobiDBLite consensus disorder prediction 110 124 - -
HCH6g1060 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 41 - -
HCH6g1060 539 Pfam Asx homology domain 292 367 IPR028020 -
HCH6g1060 539 MobiDBLite consensus disorder prediction 101 124 - -
HCH6g1060 539 Gene3D - 3 87 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0328 HCH-Chr5:2156039 HCH6g1060 HCH-Chr6:45259612 9.20E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33745 PF13919 ASXH 1.00E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1060 - - - 0.0