Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1060 ATGGGCAAGCAAGGGCCTTGCTGTCACTGTGGAGTTACAAGTACACCACTTTGGCGCAATGGGCCTCCTGAGAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACAAAGCTATCTCTAGATAACTATACTCCTTTACATGCTCGGGCAGAACCGGATGAGTATGGTGATAAAAGGATTTCTAGGTATAGGAACTTGCCGATATATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAACACAAAGACAATGGAGTTGTGGTAGGGGTTGTCCCTGATCATCCTCAGAGCTTCCATAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCAAACTCTGAGAGTTGTGCTCAATTTGGTGGTGCGGATGCCAGTGATTTGACAGGTCCTGCACAGTCAATGGTGTGGGAAGCAATGGTGCCTTCTAGAAAGAGAACCTGTGTCGGTCGTCAAAAGCCTTCTCCAGTTGAGAAACTCACTAAAGATCTTTATACAATTTTACGTGAACAGCAATCTTATTTCTCTGGATCTTCAGAGGAGGATCTGCTTTTTGAGAGGGAAACTCCAATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCGAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCACTGTCAGTTGATAATAAACAGTTCTCTGTCAATGAGGCTTATTCAGAGTCTTCTATCCTTCCTGCACACAGTGAAACTGATAACAATGTTGTAAACTTTTCAACTTCTGGATTTGGGAAAAAGCACTCTAATGGGCAGGGGCTGTTGCAGGAGCAAATCAAATGGGACAAGGCTCAGGGAAAATTGCAACCACTGGGAAATCATGATTCTCCTCTGTGTCATATAGATCTAACTGACATTCTAAACTTTGGAGAGTTTATGAAGCAATTGACAAATGAAGAGCAACGACAATTAATGAAGTTTCTGCCTTCTGTTGATGCTGAAGAGCTTCCATACAGCTTGAATAGATTGTTTGAAAGCCCTCAGTTCGAGGAGAATTTAAATTCTTTTAAGCAGCTGCTCGCTGAAGGAGTCTTTGATTTCTCCTTTCCTGGTGTAAAGACAGAAGACTGCAAGACCTTAAGACGACTTGTGCTTTCCAATTTTTCAAAATCGAAATGGGTGGAACAATATCATATACTTAAGAAATGTAATAGTGAAGAATCTGTTGTTCAAGGTCCTGCTGCAGCATCAAGTAGTTCCATGAATGCAAAGAAACTGCTTGAGGATCTAAACAAGAAAAATTCAGAAACAAAGACTACTATGAAGAGTCCGAAAGGGGTGATAGCGAAGACAAGCATGGAAAACAAGGAACTCATTGATAGTGACGGTTCTTGCTTTAGTCCAAGACGTTTATTTGCTTTGCCTACTGATGGAGGTTCCTTCATGCTGGAATCTTTGCATTTTGAAGATGAAAATTCTGACCATGATCTACTGCTGGATGTGAGATCAAACAGCTCCTTCCCACAAGCAGAACTCCTCCACCCAGCCCTAGCTTTTAGTGGTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCCGCATTTTATCCGTTACTGA 1620 42.22 MGKQGPCCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKLSLDNYTPLHARAEPDEYGDKRISRYRNLPIYKNKEVKLLKRKQHKDNGVVVGVVPDHPQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPAQSMVWEAMVPSRKRTCVGRQKPSPVEKLTKDLYTILREQQSYFSGSSEEDLLFERETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQFSVNEAYSESSILPAHSETDNNVVNFSTSGFGKKHSNGQGLLQEQIKWDKAQGKLQPLGNHDSPLCHIDLTDILNFGEFMKQLTNEEQRQLMKFLPSVDAEELPYSLNRLFESPQFEENLNSFKQLLAEGVFDFSFPGVKTEDCKTLRRLVLSNFSKSKWVEQYHILKKCNSEESVVQGPAAASSSSMNAKKLLEDLNKKNSETKTTMKSPKGVIAKTSMENKELIDSDGSCFSPRRLFALPTDGGSFMLESLHFEDENSDHDLLLDVRSNSSFPQAELLHPALAFSGQQASNSSSSVNPHFIRY 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45259612 45266713 + evm.model.ptg000003l.732 HCH6g1060 546554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1060 539 Gene3D - 290 384 IPR038108 -
HCH6g1060 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 370 IPR044589 -
HCH6g1060 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 33 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 CDD ZnF_GATA 6 54 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 Pfam GATA zinc finger 7 39 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
HCH6g1060 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1060 539 MobiDBLite consensus disorder prediction 110 124 - -
HCH6g1060 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 41 - -
HCH6g1060 539 Pfam Asx homology domain 292 367 IPR028020 -
HCH6g1060 539 MobiDBLite consensus disorder prediction 101 124 - -
HCH6g1060 539 Gene3D - 3 87 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0328 HCH-Chr5:2156039 HCH6g1060 HCH-Chr6:45259612 9.20E-200 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0746 . 33 334 C2C2-Gata Transcription Factor Family AT5G25830 51.4 2.4e-73 272.7
HCH4g0320 . 69 357 C2C2-Gata Transcription Factor Family AT5G25830 51.7 1.4e-65 246.9
HCH13g1375 . 24 292 C2C2-Gata Transcription Factor Family AT3G51080 50.9 6.8e-54 208.0
HCH14g0625 . 92 269 C2C2-Gata Transcription Factor Family AT4G36240 51.9 8.6e-41 164.1
HCH5g0328 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 2.0e-135 479.6
HCH6g1060 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.8 9.9e-127 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33745 PF13919 ASXH 1.00E-08 No_clan HCH TF