Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1098 ATGGGAAGCGGAGTATCAAGCCTCTTCTCATGCCTCAAACCGGAAACTCGCACAACCGCCCAAAACCAGCCGGATAATCACGACGTTATTTTCTCCGCTTCTGAACCATTGGACGAAACCCTAGGCCACTCCTTCTGTTACGTTCGTTCTTCTAATCGCTTTCTCTCCCCTTCCCATTCAGATCGTTTTCTCTCTCCTTCTCACTCACTCCGTTTCTCTCCTCCTCACGAACCTTCTCTCTCTTCTTCCAGAGCCCGACCCGGATTGCACGAAACCGGCTTCAAAGCTATCTCCGGTGCTTCGGTCAGTGCTAATAGTTCTATTCCCAGATCTGTTCTTTTGCTTGATAGTATTTACGATGATGCCACTGAGACGGGTGGTGGTGCTTGTGGTGTCAAAGGGAGTATTTTGAATGGGTTTGAAAGTACTTCTTCTTTTACGGCTCTTCCTCTCCAGCCGGTTCCTAGAGGCGGAACCGAGCCGATGGACCGGGGTGGGTTCTTTCTCTCCGGTCCAATTGAGCGTGGGGCGGTCTCCGGTCCGCTTGATGCTGACGGGGGTGGTGGCAGTGGTGGTGGGGGAGTTCATTTTTCAGCTCCACTTGGTGGGCTTTATGTAAAGAAGAAGAGGAAGAAGGGCATTTCGGGTATCCGAAAGGCGTTTAGTCGGAACTTTTCGGAGAAGCGGCCTTGGGTGGTGCCGGTGTTGAATTTCGTTGGTAGGAAGGAAAGTTCGACGGCTGGCGATGAGTTGGAGGCCAAGACTGAGAGTAATGTTCAATGGGCGCTTGGTAAGGCGGGGGAAGATCGGGTACATGTGGTTGTTTCGGAGGAGCAAGGGTGGCTTTTTGTTGGGATTTATGATGGGTTTAATGGCCCTGATGCACCTGAATTCTTGATGGGTAATCTTTATAGAGCTGTGTTTAATGAGCTTCAAGGATTGTTTTGGGAAGTTGATGATAGTGAGGAGGTTGCTAATTCTAATCCTGAGAATGTAGCCGCAGAGAGTACTGTTTGTGTGGAAGAAACTAATGTTGACCCGTCTACGAGGGCCTGTTGTGGAGTAGTTGGAAATAACGGGAATGCTGACCGAGGATCGGTTAAAAGAGTTACATTTCAATCGGAGGATGAATCAGAACCGAGGAGGCGGCGGAGACTATGGGAGTATTTAGCGGAGGATGATGCTCAGGATGGTCTTGATCTTTCGGGTTCGGATAGATTTGCATTTTCGGTTGACGATGCGCTTAGTGTAAATAGTGCAGGTACAGTAGTTGGTAGGAGATGGCTGTTGTTGTCTAAATTAAAACTAGGGTTGTCTAAGCATAAGGAAGGTCATGTGAAGACACTGTTTCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGCTGAGGCTGAGACTGAGAACAAGGTAGAGGAGACTTCTTATCGAAGTGGTAAGAAGCGAAAGGAGGGTTTAATTGATCATGACTTGGTGTTAGGGGCATTGGCACGAGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACTGATAAGTTGCTTGATACGAGTCCAGAGCTTGCTTTGATGGGTTCTTGCTTATTGGTTGTGTTAATGAGGGATGAGGATGTATATGTGATGAATGTGGGTGACAGTCGTGCCATTGTTGCACAGTATAAGCAAGAAGTTGGCCCTAGTGGGGACTTGAAAGAGGAGGGAGACAAAAGGTTGTGCATGGAGGGTATAATTGAGGAGTCTTTAACTCCGAGTGAAAGGAAAATAGCACAGGGGAATGAACCTTCTTCACCGACGATGAGATTGACTGCATTGCAGTTATCCACTGATCATAGCACCAGCATTGAAGAAGAAGTCAAGAGAATAAAGAATGAGCACCCGGATGACAAGCAGTGCATTGTCAATGATCGGGTGAAGGGCCGTCTCAAGGTTACAAGAGCATTTGGTGCAGGATTTTTGAAACAGCCAAAGTTGAATGATGCATTATTGGAAATGTTTCGGAATGAATATATTGGTACGGCACCATACCTATCATGCTCGCCTTCTCTTCGGCACCATAGACTCTACCCTACAGATCAATTTATAGTGCTCTCGTCTGATGGTTTGTATCAATATCTAAGCAATGAAGAAGTGGTTTCTTATGTTGAAAATTTCATGGAGAAGTTTCCTGATGGAGACCCTGCACAGCACTTAATAGAGGAGCTTCTTTGCCGTGCAGCCAGAAAAGCAGGAATGGATTTTCATGAACTATTGGACATCCCACAGGGGGATCGCAGAAAGTATCATGATGATGTTACTGTTATGGTTGTTTCGCTTGAAGGCAGAATTTGGAAATCCTCAGGAAAATATCTTTGA 2355 46.45 MGSGVSSLFSCLKPETRTTAQNQPDNHDVIFSASEPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSHSLRFSPPHEPSLSSSRARPGLHETGFKAISGASVSANSSIPRSVLLLDSIYDDATETGGGACGVKGSILNGFESTSSFTALPLQPVPRGGTEPMDRGGFFLSGPIERGAVSGPLDADGGGGSGGGGVHFSAPLGGLYVKKKRKKGISGIRKAFSRNFSEKRPWVVPVLNFVGRKESSTAGDELEAKTESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEVDDSEEVANSNPENVAAESTVCVEETNVDPSTRACCGVVGNNGNADRGSVKRVTFQSEDESEPRRRRRLWEYLAEDDAQDGLDLSGSDRFAFSVDDALSVNSAGTVVGRRWLLLSKLKLGLSKHKEGHVKTLFPWKYGLGDKEKVEAEAETENKVEETSYRSGKKRKEGLIDHDLVLGALARALEITELAYLDMTDKLLDTSPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYKQEVGPSGDLKEEGDKRLCMEGIIEESLTPSERKIAQGNEPSSPTMRLTALQLSTDHSTSIEEEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCSPSLRHHRLYPTDQFIVLSSDGLYQYLSNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVVSLEGRIWKSSGKYL 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45624089 45631044 + evm.model.ptg000003l.694 HCH6g1098 546592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1098 784 ProSiteProfiles PPM-type phosphatase domain profile. 251 772 IPR001932 -
HCH6g1098 784 MobiDBLite consensus disorder prediction 66 80 - -
HCH6g1098 784 PANTHER PROTEIN PHOSPHATASE 2C 258 772 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH6g1098 784 SMART PP2C_4 252 770 IPR001932 -
HCH6g1098 784 MobiDBLite consensus disorder prediction 66 87 - -
HCH6g1098 784 Pfam Protein phosphatase 2C 605 735 IPR001932 -
HCH6g1098 784 Gene3D - 239 779 IPR036457 -
HCH6g1098 784 SUPERFAMILY PP2C-like 264 773 IPR036457 -
HCH6g1098 784 CDD PP2Cc 484 772 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1098 HCH-Chr6:45624089 HCH9g0672 HCH-Chr9:4456440 9.50E-121 dispersed
HCH6g1098 HCH-Chr6:45624089 HCH2g1087 HCH-Chr2:53786056 1.40E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1098 - - - 0.0