Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1102 ATGGAAGAATGTAGTAACAATCTTTCTGAGGAAAATACAAATGGGGTTGCTACAAGCACCATGGATCAGAATCAGAAACTAAATGTGTATGTGTGGGACATGGATGAGACTATTATATTGCTCAAGTCTTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTGAAAAAGGGTGAAGAAATTGGAAAAGTTTGGGAGAAGCAAATTCTTGATCTTTGTGATGATCACTTCTTCTATGAACAAATTGAAAACTATAACCAGCCGTCTCTTGATGCCTTGAGAGAATATGATGATGGCCGTGATCTTTCTAATTATGATTTTGAGCAAGACGGTTTTGGTTCACCGTGCGATGATGAAAACAAAAAAAAACTCGCTTACCGGCAACGTGCTATAGCCAATAAGTACAGAGAGGGTTTACAAAATATCTTTGATCAACCGAAGATGAAGCTCTGGAATGATTTGTATGAAGTGACTGATGTCTATACCGATAGATGGTTCTCCTCAGCTCGAGCTTTCTTGGAGGAGTGTTTGTTCGCAGATGCAGATAAACCTCCAGTTGCCTCTGTTGATGGAACTTTTAACACTACTTCTAGAAGTTGTCAGCACGTCAATATCTTGGTGACTTCAGGATCGTTGATACCCAGCCTTGTGAAATGCTTACTATTTCGGCTCGATGGTCTAATAACACATGGAAATGTCTACAGCTCGTGGGAAGTGGGAAAACTTCAATGTTTCCAGTGGATCAAGGAGCGTTTCAACCATCCAAATGTTCGCTTCTGTGCAATAGGTGATGGATGGGAAGAGTGCGAGGCTGCACAGTCCATGCAATGGCCATTCGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGTTTCCTGGTCTGTCTCTTAAAACGCTGGGCTTTTACTTCTCAGTTATTTATGGTAACTCCAATTCAACAAGTGATGAAGAAAAGTTCACATGA 978 41.0 MEECSNNLSEENTNGVATSTMDQNQKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKKGEEIGKVWEKQILDLCDDHFFYEQIENYNQPSLDALREYDDGRDLSNYDFEQDGFGSPCDDENKKKLAYRQRAIANKYREGLQNIFDQPKMKLWNDLYEVTDVYTDRWFSSARAFLEECLFADADKPPVASVDGTFNTTSRSCQHVNILVTSGSLIPSLVKCLLFRLDGLITHGNVYSSWEVGKLQCFQWIKERFNHPNVRFCAIGDGWEECEAAQSMQWPFVKIDLQPGSPHRFPGLSLKTLGFYFSVIYGNSNSTSDEEKFT 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45646145 45648509 + evm.model.ptg000003l.690 HCH6g1102 546596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1102 325 PANTHER EYES ABSENT 23 310 IPR028472 GO:0004725(PANTHER)|GO:0004725(InterPro)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
HCH6g1102 325 NCBIfam EYA conserved domain 27 304 IPR006545 GO:0007275(InterPro)
HCH6g1102 325 FunFam Eyes absent homolog 28 296 - -
HCH6g1102 325 SFLD Haloacid Dehalogenase 27 287 - -
HCH6g1102 325 Gene3D - 28 292 IPR038102 -
HCH6g1102 325 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 27 287 - -
HCH6g1102 325 SUPERFAMILY HAD-like 25 288 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1102 K15616 - - csv:101203755 525.783
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31