Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1107 ATGACCATGGCTGGATTAGATTTAAGCAGTCGCTACGTTTCTCATCTTCAAACCACAGATCACTTTCACCACCAACCAGACTCCGCCGCCGCACACAACCACTTCTCCTCCGACCACCATCATCACCACGATAACGACGAAGACGATCCCAACCAAACCCTGACCGGTCCAGGCGACATAGTGGGCCGCCGCCCCCGTGGAAGACCGCCCGGTTCAAAGAACAAACCTAAACCGCCAGTAATAATAACCCGAGAAAGTGCCAATACTCTCCGTGTTCATATTCTCGAAGTCGGAAATGGCTGCGATGTCTTTGACTGTATCGCCACGTATGCTCGCCGCCGCCAACGTGGCATCTGTATCTTAAGTGGAAGTGGCCACGTCACCAATGTCGGATTACGACAGCCGACATCCGCCGGAGCAGTGTTGACGTTACATGGAAGGTTTGAAATTTTATCATTGTCGGGTTCTTTTCTGCCACCTCCGGCTCCCCCGGGCGCGACGAGTTTGACTATTTTTTTGGCTGGAGGACAAGGACAAGTGGTGGGTGGAGCGGTGGCCGGAGAGTTGACGGCGGCGGGTCCGGTTATTTTGATTGCTGCGTCGTTTACGAATGTGGCGTATGAAAGATTGCCGTTGGAGGAGGATGATCAGCAGCAGTTGCAGATTCAGCCGTCGTCATCGCATTCGCAGCAGCAAGCAGGAGGCGGAGAAGGCGGCGGCGGACACCCGTTTTCTGACCCTTCTAATTCGGGGCTTCCTTTCTTGAATTTGCCTCTTCATATGCAAAATGTTCAACTTCCACCACCCTTCTGA 813 53.38 MTMAGLDLSSRYVSHLQTTDHFHHQPDSAAAHNHFSSDHHHHHDNDEDDPNQTLTGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGNGCDVFDCIATYARRRQRGICILSGSGHVTNVGLRQPTSAGAVLTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGAVAGELTAAGPVILIAASFTNVAYERLPLEEDDQQQLQIQPSSSHSQQQAGGGEGGGGHPFSDPSNSGLPFLNLPLHMQNVQLPPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45680408 45681220 + evm.model.ptg000003l.685 HCH6g1107 546601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1107 270 Gene3D - 90 231 - -
HCH6g1107 270 MobiDBLite consensus disorder prediction 23 81 - -
HCH6g1107 270 ProSiteProfiles PPC domain profile profile. 87 223 IPR005175 -
HCH6g1107 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 222 - -
HCH6g1107 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 241 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH6g1107 270 MobiDBLite consensus disorder prediction 23 50 - -
HCH6g1107 270 MobiDBLite consensus disorder prediction 216 234 - -
HCH6g1107 270 CDD DUF296 91 166 IPR005175 -
HCH6g1107 270 PIRSF ESCAROLA 6 267 IPR014476 GO:0003680(InterPro)
HCH6g1107 270 MobiDBLite consensus disorder prediction 215 253 - -
HCH6g1107 270 FunFam AT-hook motif nuclear-localized protein 90 217 - -
HCH6g1107 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 203 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0280 HCH-Chr5:1673266 HCH6g1107 HCH-Chr6:45680408 2.00E-78 dispersed
HCH6g1107 HCH-Chr6:45680408 HCH7g1551 HCH-Chr7:47972397 2.20E-61 dispersed
HCH6g1107 HCH-Chr6:45680408 HCH6g1108 HCH-Chr6:45683439 1.00E-13 tandem
HCH5g0278 HCH-Chr5:1662524 HCH6g1107 HCH-Chr6:45680408 4.00E-15 wgd
HCH6g1107 HCH-Chr6:45680408 HCH6g1352 HCH-Chr6:47549431 1.30E-72 wgd
HCH6g1107 HCH-Chr6:45680408 HCH7g1504 HCH-Chr7:47619708 2.20E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1107 - - - 0.0