Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1108 ATGGATTCGCGGGACAGGCCGCTTCAAAATATACATCATCAGCAACAATTACAAGCAACTCATCAAAACAGGATGATGGGGCAAAACCCATATCCGACACCGATGCCTAACAACAACAACAACAATCCTAATTCGGCCGCTGCTCAAATGATGTCCTCATCAAGATTTCCGTTCAATCCCATGATGGTATCTGTTTGTAAGCCTGAATCTCCGAATGCCGCCGCTGGTGGTTCTTATGATGGATCACAATCTGAATTGCGGTCTGGTCATGGGGGTTTTAACATTGATTCAGCCAAGAAGAAGAGGGGACGGCCACGGAAGTATTCTCCTGATGGGAATATCGCTTTGGGGTTATCTCCAACACCGATTACTTCTTCTGCTGTTTCTGGTGATCCGAGTGGTGCACATTCGTCGGAGCCTCGGTCAAAAAAACACCGAGGAAGGCCGGCCGGGACGGGGAAGAAGCAAATGGATGCTTTAGGAACTGGTGGTGTTGGCTTTACTCCTCATGTTATTCTGGTGAATCCAGGAGAGGACATTGCGTCAAAGGTTATGGCCTTTACACAGCAAGGACCGCGGACTGTTTGTATTCTCTCTGCTCATGGTGCTGTCTGCAATGTTTCCCTTCATCAACCAACATTGGCGTCTGGTACTGTATTATATGAGGGTCGATATGAAATCATATCTCTATCAGGCTCCTTCTTGATTTCTGAAAGTAATGGTAATCGAAGCCGAACAGGTGGTTTGTGTGTGTCTCTTGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTGCCAACATGCTAACAGCTGCATCTACTGTTCAGGTTATAGTGGGCAGCTTTATTGTGGATGTGAAAAAACTTGACTCAAGTATACATAAATCTGGGCAATCTTCTGCATCTGGACCCTCCAATATGTTAAATTTTAGCGCACCCGCGGCAGTAGCCAGCCCTTCTGATGGGGCATCAAATGATTCATCAGATGCAAATGGTGGTAGCCCTTTAAGCAACAGGGGACATGGAATTTACACCAATGCCAATCAACCAATTCATAATGCGCAGATGTACCAACTATGGGGTAATCGAAATCAACAATGA 1098 45.9 MDSRDRPLQNIHHQQQLQATHQNRMMGQNPYPTPMPNNNNNNPNSAAAQMMSSSRFPFNPMMVSVCKPESPNAAAGGSYDGSQSELRSGHGGFNIDSAKKKRGRPRKYSPDGNIALGLSPTPITSSAVSGDPSGAHSSEPRSKKHRGRPAGTGKKQMDALGTGGVGFTPHVILVNPGEDIASKVMAFTQQGPRTVCILSAHGAVCNVSLHQPTLASGTVLYEGRYEIISLSGSFLISESNGNRSRTGGLCVSLASADGQVLGGIANMLTAASTVQVIVGSFIVDVKKLDSSIHKSGQSSASGPSNMLNFSAPAAVASPSDGASNDSSDANGGSPLSNRGHGIYTNANQPIHNAQMYQLWGNRNQQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45683439 45692671 - evm.model.ptg000003l.684 HCH6g1108 546602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1108 365 MobiDBLite consensus disorder prediction 293 344 - -
HCH6g1108 365 MobiDBLite consensus disorder prediction 76 90 - -
HCH6g1108 365 MobiDBLite consensus disorder prediction 118 136 - -
HCH6g1108 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 281 IPR005175 -
HCH6g1108 365 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
HCH6g1108 365 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
HCH6g1108 365 MobiDBLite consensus disorder prediction 1 47 - -
HCH6g1108 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 333 IPR039605 GO:0003680(InterPro)
HCH6g1108 365 MobiDBLite consensus disorder prediction 10 47 - -
HCH6g1108 365 CDD DUF296 168 281 IPR005175 -
HCH6g1108 365 Gene3D - 169 295 - -
HCH6g1108 365 ProSiteProfiles PPC domain profile profile. 163 303 IPR005175 -
HCH6g1108 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 282 - -
HCH6g1108 365 MobiDBLite consensus disorder prediction 69 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0865 HCH-Chr4:5539854 HCH6g1108 HCH-Chr6:45683439 8.50E-56 dispersed
HCH5g0278 HCH-Chr5:1662524 HCH6g1108 HCH-Chr6:45683439 7.50E-70 dispersed
HCH6g1108 HCH-Chr6:45683439 HCH9g0523 HCH-Chr9:3379024 6.10E-46 dispersed
HCH6g1107 HCH-Chr6:45680408 HCH6g1108 HCH-Chr6:45683439 1.00E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1108 - - - 0.0