Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1113 ATGACAGATTACAGACTGCCGTCGACGATGAATCTGTGGACCGACGATTCCGCGTCTGTAATGGACGCGTTCATGACGTCCGATCTCTCCTCTTACTGGACTCCATCTAATTCCCAATCACAACAACCTCCTCAATCCTCTGCTTCCACTTCCACTCCAACTCCTGACCCCGCAAAACCCATCTCTCAATCTCAACCCTTCAATCAAGAATCTCTCCAGCAACGTCTCCAAGCTTTAATCGACGGTGCCCGTGAAAGCTGGACTTACGCCATTTTCTGGCAGTCTTCTTACGATTACTCCGGCGCTTCTGTTTTGGGTTGGGGAGATGGGTATTATAAAGGAGAAGAAGACAAATCCAAAGGGAAGAAAAAAATCGTCACTTCCGTCGCCGAGCAAGCTCACCGGAAAAAAGTTCTCCGAGAATTGAATTCTTTGATTTCCGGTAACGCTTCCGGTTCCGATGAAGCTGTGGACGAGGAAGTTACTGATACGGAGTGGTTTTTTTTGGTTTCGATGACGCAGTCCTTTGTCAACGGTGTGGGATTGCCGAGTCAGGCCTTTTACAATTCTACCCCGATCTGGGTTTCCGGCGCCGACCGTTTATCGGCGGCGGCGTGTGAGAGGGCTCGGCAAGGGAGTGTTTTTGGGTTGAGGACGATGGTTTGTATTCCGTCCGCGAATGGGGTTGTGGAAATGGGATCGACGGAGATGATTCACCGGACGTCGGATTTGATGAATAAAGTAAAGGTTTTGTTTAATTTTAATAACAATGAAATGGAAATGGGGTCGTGGCAAGATGAAGGAGAAAACGATCCGTCTTCGCTTTGGATCAGTGAGCCGTCGAGTACTATTGAAATGAAGGATTCCGTACCGAAGCCGATTCATTCTGAAAATCCGAGCTCGAGCAGTTTGACTGAAACCCTGAGTGCGATTCAGGTGAAGCAAAGTCAGAGTTTTTTGAATTTTGCTGATTTTGGATTCGAGGGAAGCAGTGCTAAGAATGTGAATTTGAATTCGTTTAAGCCGGAATCTGGGGGGATGTTGAATTTCGGTGAGAGTAATCGGAGTTCTTATGGTACCGGGAGTCTGTTTACGGGTAATTCGCAATATGTTGCGGCGGAGGAGAATGAGAAGAAACGGTCTCCGGCTTCTAGGAGTAGTAATGATGAAGGGTTACTTTCGTTTACTTCCGGTGTTGTTTTGCCGTCTTCCGGTAAGGTAAAGTCCGGCACGGTGGTTGATTCGGATCATTCGGATCTTGAGGCGTCGGTGATTCGTGAGGTTGATAGTTGTAAGCTTGTTGCGGAACCGGAGAAGAGGCCGAGGAAGAGAGGGAGGAAGCCTGCTAATGGGAGAGAAGAGCCTTTGAATCATGTAGAAGCAGAGAGGCAGAGGAGGGAAAAACTCAATCAGAAATTCTATGCACTTCGTGCTGTTGTTCCTAATGTTTCCAAGATGGACAAGGCTTCGCTTCTAGGCGATGCGGTCTCTTATATTAACGAGCTTAAATCAAAGCTTCAAACAGCCGAATTGGATAAAACCGAGATGCAGAAGCAATTGGATTCGATGAAGAAAGACTCAAGCTATGCAGGATCTGCAGGAACCCCAATTGAGGAAGATCTGAAGGTATCAAGCAAATTGATGGAAATGGATATCGATGTGAAGATTATCGGTTGGGACGCCATGATTAGGATCCAATGCAGCAAGAAAAACCATCCGGCAGCGAGGTTGATGACGGCTCTAAAGGATCTTGATTTGGAAATGCTACATGCTAGTGTGTCTGTGGTGAATGATTTGATGATCCAACAGGCGACCGTGAAGATGGGGAGCCGATTTTACACGCAGGAGCAGCTCAGAATAGCCCTTGTCTCTAAAATCAGCAATGTGGGTCGCCATGGAATCATGTAG 1908 47.17 MTDYRLPSTMNLWTDDSASVMDAFMTSDLSSYWTPSNSQSQQPPQSSASTSTPTPDPAKPISQSQPFNQESLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKSKGKKKIVTSVAEQAHRKKVLRELNSLISGNASGSDEAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYNSTPIWVSGADRLSAAACERARQGSVFGLRTMVCIPSANGVVEMGSTEMIHRTSDLMNKVKVLFNFNNNEMEMGSWQDEGENDPSSLWISEPSSTIEMKDSVPKPIHSENPSSSSLTETLSAIQVKQSQSFLNFADFGFEGSSAKNVNLNSFKPESGGMLNFGESNRSSYGTGSLFTGNSQYVAAEENEKKRSPASRSSNDEGLLSFTSGVVLPSSGKVKSGTVVDSDHSDLEASVIREVDSCKLVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQTAELDKTEMQKQLDSMKKDSSYAGSAGTPIEEDLKVSSKLMEMDIDVKIIGWDAMIRIQCSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLRIALVSKISNVGRHGIM 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45764486 45766393 - evm.model.ptg000003l.679 HCH6g1113 546607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1113 635 PANTHER MYC 59 625 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
HCH6g1113 635 MobiDBLite consensus disorder prediction 435 457 - -
HCH6g1113 635 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
HCH6g1113 635 SMART finulus 459 508 IPR011598 GO:0046983(InterPro)
HCH6g1113 635 Pfam Plant bHLH transcription factor, ACT-like domain 552 608 IPR054502 -
HCH6g1113 635 Pfam Helix-loop-helix DNA-binding domain 457 503 IPR011598 GO:0046983(InterPro)
HCH6g1113 635 Coils Coil 499 526 - -
HCH6g1113 635 CDD bHLH_AtAIB_like 450 527 - -
HCH6g1113 635 FunFam Transcription factor bHLH13 446 520 - -
HCH6g1113 635 Gene3D - 452 529 IPR036638 GO:0046983(InterPro)
HCH6g1113 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 522 IPR036638 GO:0046983(InterPro)
HCH6g1113 635 MobiDBLite consensus disorder prediction 31 65 - -
HCH6g1113 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 453 502 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0022 HCH-Chr5:122218 HCH6g1113 HCH-Chr6:45764486 9.70E-32 dispersed
HCH5g0074 HCH-Chr5:456858 HCH6g1113 HCH-Chr6:45764486 2.70E-28 dispersed
HCH6g1113 HCH-Chr6:45764486 HCH7g1715 HCH-Chr7:48968235 5.20E-61 dispersed
HCH13g1138 HCH-Chr13:37473987 HCH6g1113 HCH-Chr6:45764486 3.40E-23 transposed
HCH6g1185 HCH-Chr6:46307534 HCH6g1113 HCH-Chr6:45764486 2.90E-51 transposed
HCH5g0270 HCH-Chr5:1595608 HCH6g1113 HCH-Chr6:45764486 1.00E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33750 PF14215 bHLH-MYC_N 5.50E-53 CL0161 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1113 K13422 - csv:101205372 882.093