Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1128 ATGGTTTCGAGATCTTATTCGAATTTGTTAGAGCTTGCTTCTGGTGGTTCTCCAACTTTTAGTTTTGGTCGAGAGAGGAAGAGGCTTCCTAGAGTTGCAACTGTTGCCGGAGTCTTGTCTGAACTTGATGATGATAACAGCAACAGCTCTGATGCTCCTTCGTCCGTATCTCAAGACCGGATGATCATTGTCGGTAATCAGCTTCCAATTCGAGCTCATCGAGATGATGATGGAGATTGGGACTTTAGCTTGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGTCTCGGGGAAGATGTGGAAGTAATATATATTGGTTGTCTTAAAGAGGAGGTCGACCCAAGTGAGCAAGATGATGTTGCACAAACTCTTCTGGACAGATTCAAGTGTGTTCCGGCGTTCATCCCTCCCGAGATTTTTAGTAAGTTTTATCATGGATTCTGCAAGCAATATCTATGGCCACTATTTCACTACATGCTTCCTTTGTCACCGGATCTTGGTGGCCGGTTCGACCGTTCTCTCTGGCAAGCTTATCTTTCCGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGATGACTTCGTTTGGGTTCATGACTACCATCTGATGGTCTTGCCTACATTTTTGAGGAAGAGATTTAACAGGGCGAAGCTTGGATTTTTCCTACACAGTCCTTTTCCTTCGTCTGAGATTTATAGAACCCTTCCTGTGAGAGATGAACTTCTGAGAGCACTATTGAACTCCGATCTTATTGGCTTCCACACATTTGATTATGCAAGGCACTTCTTGTCTTGCTGCAGTAGAATGCTTGGTCTGTCGTATCAGTCTAAGCGAGGTTACATCGGTCTTGAATATTATGGTCGCACCGTGAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGGCAGCTGCAAAATGTATTAAATCTTCCCGAGACTGTATCCAAAGTTGCAGAATTGAAAGATAGATTTAGGGGTCAAACTGTTTTGCTTGGGGTTGATGACATGGATATTTTTAAAGGAATCAGCTTGAAACTGTTGGCATTTGAACAATTACTCAGACAACATCCCGAAAGGTGGGGTAAAGTTGTGTTAGTACAAATCGCAAACCCGGCAAGAGGCAGAGGGAAAGATGTACAGGAGGTTGTAGCTGAAACTACTGCTACTGTGAATAGGATCAACATGACATTCAAAAGGCCGGGATATGAGCCTGTGGTTTTAATCTGTACCCCCTTACAGTTTTATGAGCGAATTGCTTACTATACAATTGCTGAGTGCTGTCTTGTTACAGCAGTAAGAGATGGGATGAACCTTATACCTTATGAATATATTATATGTCGACAAGGCAATGAGAAGCTCGACGAGGTTCTGAGACTAAACCCCTCAACTGCAAAGAAGAGTATGCTGGTAGTATCTGAGTTTGTTGGGTGTTCCCCATCGCTCAGTGGGGCCATTCGAGTCAACCCTTGGAATATTGACGCAGTCACTGAAGCAATGAATTCTGCCTTGGTAATCCCTGAGGCTGAAAAACAACTGCGACATGAGAAGCATCATAGATATGTTAGTACACATGATGTTGCATACTGGGCACGCAGCTTTTTGCAGGATCTTGGAAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGTATAGGTTTCGGTTTAGGGTTTCGAGTTATTGCTTTGGATCCAAATTTTAGGAAGCTTTCTGTTGATCATATTGTTTCTGTTTATAAGAGAACCAAGAATAGAGCTATCTTGTTAGATTATGATGGTATCATGATGCTTCCAGGCTCAATTAGCATGAATCCAAATTCCGAAGCCATTGAAATCTTGAACAACTTATGTAGAGATCCTAAGAATGTAGTCTTCCTTGTTAGCGGAAAGGACAGAAGAACTCTGACTGAATGGTTTTCATCATGTGAAAAGCTTGGACTAGCTGCAGAACATGGTTATTATCTGAGGCCGAATCATAATGCAGATTGGGAGACTTGTTTGGCTGTGACAGATTTTTATTGGAAACAGATCGCAGAGCCTGTTATGCAATTATATACTGAGACAACTGATGGATCTTCAATTGAAACTAAAGAGAGTGCTCTTGTTTGGAACTACCTTTATGCGGATCCCGATTTTGGATCATGTCAGGCAAAGGAACTTTTGGATCACCTGGAAAGTGTTCTTGCCAATGAACCGGTTTCTGTCAAGAGTGGCCAACATATTGTAGAAGTCAAACCTCAGGGTGTCAACAAGGGACTCGTAGCAGAACATCTCTTACGAACAATGACGGAGAAAGGAATGCTTCCCGACTTTGTTCTGTGCATCGGAGATGACAGGTCGGACGAGGACATGTTCGAGGTGATAATGAACGCAAAAGCCACTCTTTCTCCCGGTGCTGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCAAGCAAGGCCAAGTATTACTTGGAAGACACACATGAAATATTGAGAATGTTACACGGTCTCACTAACGCGTTCGAGCACACGGTTAGAAATGCCACACAAACACCTCAGAGAGTGGTAATTGCAGAGAGTAAATAG 2583 42.82 MVSRSYSNLLELASGGSPTFSFGRERKRLPRVATVAGVLSELDDDNSNSSDAPSSVSQDRMIIVGNQLPIRAHRDDDGDWDFSLDEDSLLLQLKDGLGEDVEVIYIGCLKEEVDPSEQDDVAQTLLDRFKCVPAFIPPEIFSKFYHGFCKQYLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRAKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELKDRFRGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKVVLVQIANPARGRGKDVQEVVAETTATVNRINMTFKRPGYEPVVLICTPLQFYERIAYYTIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDEVLRLNPSTAKKSMLVVSEFVGCSPSLSGAIRVNPWNIDAVTEAMNSALVIPEAEKQLRHEKHHRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTKNRAILLDYDGIMMLPGSISMNPNSEAIEILNNLCRDPKNVVFLVSGKDRRTLTEWFSSCEKLGLAAEHGYYLRPNHNADWETCLAVTDFYWKQIAEPVMQLYTETTDGSSIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGLVAEHLLRTMTEKGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKAKYYLEDTHEILRMLHGLTNAFEHTVRNATQTPQRVVIAESK 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45863708 45867913 - evm.model.ptg000003l.664 HCH6g1128 546622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1128 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
HCH6g1128 860 NCBIfam HAD-IIB family hydrolase 593 795 IPR006379 -
HCH6g1128 860 Gene3D Glycogen Phosphorylase B; 53 311 - -
HCH6g1128 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 547 - -
HCH6g1128 860 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH6g1128 860 Pfam Trehalose-phosphatase 594 826 IPR003337 GO:0005992(InterPro)
HCH6g1128 860 SUPERFAMILY HAD-like 591 836 IPR036412 -
HCH6g1128 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
HCH6g1128 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 849 - -
HCH6g1128 860 CDD HAD_TPP 592 828 - -
HCH6g1128 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
HCH6g1128 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 838 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH6g1128 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
HCH6g1128 860 Gene3D - 590 694 IPR023214 -
HCH6g1128 860 Gene3D - 720 850 IPR023214 -
HCH6g1128 860 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH6g1128 860 NCBIfam trehalose-phosphatase 589 837 IPR003337 GO:0005992(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1128 K16055 - - csv:101207192 1596.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0986 HCH-Chr12:7151140 HCH6g1128 HCH-Chr6:45863708 1.30E-124 dispersed
HCH14g1006 HCH-Chr14:37347846 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g0188 HCH-Chr1:17369445 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g1015 HCH-Chr1:58160433 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH3g0746 HCH-Chr3:5405414 HCH6g1128 HCH-Chr6:45863708 3.30E-123 dispersed
HCH6g1128 HCH-Chr6:45863708 HCH8g1373 HCH-Chr8:48475020 0.00E+00 dispersed
HCH6g1128 HCH-Chr6:45863708 HCH7g0126 HCH-Chr7:833987 0.00E+00 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH12g0986 . 91 612 Trehalose Biosynthesis Gene Families AT1G17000 62.1 1.3e-191 666.8
HCH3g0746 . 120 638 Trehalose Biosynthesis Gene Families AT1G17000 61.5 5.1e-191 664.8
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002818 2 2 2 3 2 1 1 1 1 1 1 1 3 1 1 4 1 3 4 1 1 2 2 2 2 1 2 3 4 1 56