Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1128 ATGGTTTCGAGATCTTATTCGAATTTGTTAGAGCTTGCTTCTGGTGGTTCTCCAACTTTTAGTTTTGGTCGAGAGAGGAAGAGGCTTCCTAGAGTTGCAACTGTTGCCGGAGTCTTGTCTGAACTTGATGATGATAACAGCAACAGCTCTGATGCTCCTTCGTCCGTATCTCAAGACCGGATGATCATTGTCGGTAATCAGCTTCCAATTCGAGCTCATCGAGATGATGATGGAGATTGGGACTTTAGCTTGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGTCTCGGGGAAGATGTGGAAGTAATATATATTGGTTGTCTTAAAGAGGAGGTCGACCCAAGTGAGCAAGATGATGTTGCACAAACTCTTCTGGACAGATTCAAGTGTGTTCCGGCGTTCATCCCTCCCGAGATTTTTAGTAAGTTTTATCATGGATTCTGCAAGCAATATCTATGGCCACTATTTCACTACATGCTTCCTTTGTCACCGGATCTTGGTGGCCGGTTCGACCGTTCTCTCTGGCAAGCTTATCTTTCCGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGATGACTTCGTTTGGGTTCATGACTACCATCTGATGGTCTTGCCTACATTTTTGAGGAAGAGATTTAACAGGGCGAAGCTTGGATTTTTCCTACACAGTCCTTTTCCTTCGTCTGAGATTTATAGAACCCTTCCTGTGAGAGATGAACTTCTGAGAGCACTATTGAACTCCGATCTTATTGGCTTCCACACATTTGATTATGCAAGGCACTTCTTGTCTTGCTGCAGTAGAATGCTTGGTCTGTCGTATCAGTCTAAGCGAGGTTACATCGGTCTTGAATATTATGGTCGCACCGTGAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGGCAGCTGCAAAATGTATTAAATCTTCCCGAGACTGTATCCAAAGTTGCAGAATTGAAAGATAGATTTAGGGGTCAAACTGTTTTGCTTGGGGTTGATGACATGGATATTTTTAAAGGAATCAGCTTGAAACTGTTGGCATTTGAACAATTACTCAGACAACATCCCGAAAGGTGGGGTAAAGTTGTGTTAGTACAAATCGCAAACCCGGCAAGAGGCAGAGGGAAAGATGTACAGGAGGTTGTAGCTGAAACTACTGCTACTGTGAATAGGATCAACATGACATTCAAAAGGCCGGGATATGAGCCTGTGGTTTTAATCTGTACCCCCTTACAGTTTTATGAGCGAATTGCTTACTATACAATTGCTGAGTGCTGTCTTGTTACAGCAGTAAGAGATGGGATGAACCTTATACCTTATGAATATATTATATGTCGACAAGGCAATGAGAAGCTCGACGAGGTTCTGAGACTAAACCCCTCAACTGCAAAGAAGAGTATGCTGGTAGTATCTGAGTTTGTTGGGTGTTCCCCATCGCTCAGTGGGGCCATTCGAGTCAACCCTTGGAATATTGACGCAGTCACTGAAGCAATGAATTCTGCCTTGGTAATCCCTGAGGCTGAAAAACAACTGCGACATGAGAAGCATCATAGATATGTTAGTACACATGATGTTGCATACTGGGCACGCAGCTTTTTGCAGGATCTTGGAAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGTATAGGTTTCGGTTTAGGGTTTCGAGTTATTGCTTTGGATCCAAATTTTAGGAAGCTTTCTGTTGATCATATTGTTTCTGTTTATAAGAGAACCAAGAATAGAGCTATCTTGTTAGATTATGATGGTATCATGATGCTTCCAGGCTCAATTAGCATGAATCCAAATTCCGAAGCCATTGAAATCTTGAACAACTTATGTAGAGATCCTAAGAATGTAGTCTTCCTTGTTAGCGGAAAGGACAGAAGAACTCTGACTGAATGGTTTTCATCATGTGAAAAGCTTGGACTAGCTGCAGAACATGGTTATTATCTGAGGCCGAATCATAATGCAGATTGGGAGACTTGTTTGGCTGTGACAGATTTTTATTGGAAACAGATCGCAGAGCCTGTTATGCAATTATATACTGAGACAACTGATGGATCTTCAATTGAAACTAAAGAGAGTGCTCTTGTTTGGAACTACCTTTATGCGGATCCCGATTTTGGATCATGTCAGGCAAAGGAACTTTTGGATCACCTGGAAAGTGTTCTTGCCAATGAACCGGTTTCTGTCAAGAGTGGCCAACATATTGTAGAAGTCAAACCTCAGGGTGTCAACAAGGGACTCGTAGCAGAACATCTCTTACGAACAATGACGGAGAAAGGAATGCTTCCCGACTTTGTTCTGTGCATCGGAGATGACAGGTCGGACGAGGACATGTTCGAGGTGATAATGAACGCAAAAGCCACTCTTTCTCCCGGTGCTGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCAAGCAAGGCCAAGTATTACTTGGAAGACACACATGAAATATTGAGAATGTTACACGGTCTCACTAACGCGTTCGAGCACACGGTTAGAAATGCCACACAAACACCTCAGAGAGTGGTAATTGCAGAGAGTAAATAG 2583 42.82 MVSRSYSNLLELASGGSPTFSFGRERKRLPRVATVAGVLSELDDDNSNSSDAPSSVSQDRMIIVGNQLPIRAHRDDDGDWDFSLDEDSLLLQLKDGLGEDVEVIYIGCLKEEVDPSEQDDVAQTLLDRFKCVPAFIPPEIFSKFYHGFCKQYLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRAKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELKDRFRGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKVVLVQIANPARGRGKDVQEVVAETTATVNRINMTFKRPGYEPVVLICTPLQFYERIAYYTIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDEVLRLNPSTAKKSMLVVSEFVGCSPSLSGAIRVNPWNIDAVTEAMNSALVIPEAEKQLRHEKHHRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTKNRAILLDYDGIMMLPGSISMNPNSEAIEILNNLCRDPKNVVFLVSGKDRRTLTEWFSSCEKLGLAAEHGYYLRPNHNADWETCLAVTDFYWKQIAEPVMQLYTETTDGSSIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGLVAEHLLRTMTEKGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKAKYYLEDTHEILRMLHGLTNAFEHTVRNATQTPQRVVIAESK 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45863708 45867913 - evm.model.ptg000003l.664 HCH6g1128 546622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1128 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
HCH6g1128 860 NCBIfam HAD-IIB family hydrolase 593 795 IPR006379 -
HCH6g1128 860 Gene3D Glycogen Phosphorylase B; 53 311 - -
HCH6g1128 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 547 - -
HCH6g1128 860 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH6g1128 860 Pfam Trehalose-phosphatase 594 826 IPR003337 GO:0005992(InterPro)
HCH6g1128 860 SUPERFAMILY HAD-like 591 836 IPR036412 -
HCH6g1128 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
HCH6g1128 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 849 - -
HCH6g1128 860 CDD HAD_TPP 592 828 - -
HCH6g1128 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
HCH6g1128 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 838 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH6g1128 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
HCH6g1128 860 Gene3D - 590 694 IPR023214 -
HCH6g1128 860 Gene3D - 720 850 IPR023214 -
HCH6g1128 860 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH6g1128 860 NCBIfam trehalose-phosphatase 589 837 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0986 HCH-Chr12:7151140 HCH6g1128 HCH-Chr6:45863708 1.30E-124 dispersed
HCH14g1006 HCH-Chr14:37347846 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g0188 HCH-Chr1:17369445 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g1015 HCH-Chr1:58160433 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH3g0746 HCH-Chr3:5405414 HCH6g1128 HCH-Chr6:45863708 3.30E-123 dispersed
HCH6g1128 HCH-Chr6:45863708 HCH8g1373 HCH-Chr8:48475020 0.00E+00 dispersed
HCH6g1128 HCH-Chr6:45863708 HCH7g0126 HCH-Chr7:833987 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1128 K16055 - csv:101207192 1596.25