Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1130 | ATGAGCTTTCAAGATATCGAAGCTGGTCGGCCTTTTGGTTCTTCGAGGAGAGACCTAATTAATGGAAAACAAGATCCAACTCAAGCCGTTGCTTCTGGAATTTTTCAGATCAATACTGCTGTCGCCACTTTTCAGAGGCTCGTTAATACCTTAGGGACTCCGAAAGATACCCCTGAGCTACGTGAGAAGCTGCACAAGACCAGGTTGCATATTGGACAGTTGGTCAAGGACACCTCTTCTAAACTTAAACAAGCCAGTGAAATAGATCATCATGTTGAAGTTAATGCTAGCAAGAAGATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCGTATACACCTTTTATTCCCCAAGCTGCTCTTCCTTCTAGCTACACAACCAATGAGTTAGATGGCAACCCAGAGAGGAGTTTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTTTTGGACAATGAAATATCCTTCAATGAAGCAATAATTGAGGAAAGAGAGCAAGGAATTCATGAAATTCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTCTGGTTCATGAACAGGGAGCCATGATCGATGATATCGGGTCGAACATAGAGGGTGCTCATGCTGCAACATCACAGGGGACAACTCAGCTTGTAAAAGCTTCGAAGACACAGAAATCAAATTCATCTCTGGCCTGCTTACTTTTGGTGATATTTGGCATCATCCTTCTCATTGTGGTTATAATCGTTGTTGCGTAA | 825 | 42.55 | MSFQDIEAGRPFGSSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSSKLKQASEIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFIPQAALPSSYTTNELDGNPERSFEQRALLVESRRQEVLLLDNEISFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLVKASKTQKSNSSLACLLLVIFGIILLIVVIIVVA | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 45882945 | 45886139 | - | evm.model.ptg000003l.662 | HCH6g1130 | 546624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1130 | 274 | Gene3D | - | 174 | 274 | - | - | |
| HCH6g1130 | 274 | Pfam | Syntaxin-like protein | 30 | 130 | IPR006011 | GO:0016020(InterPro) | |
| HCH6g1130 | 274 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| HCH6g1130 | 274 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 181 | 243 | IPR000727 | - | |
| HCH6g1130 | 274 | Pfam | SNARE domain | 218 | 269 | IPR000727 | - | |
| HCH6g1130 | 274 | ProSitePatterns | Syntaxin / epimorphin family signature. | 187 | 226 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| HCH6g1130 | 274 | FunFam | Syntaxin-22 like | 174 | 274 | - | - | |
| HCH6g1130 | 274 | SMART | SynN_4 | 16 | 128 | IPR006011 | GO:0016020(InterPro) | |
| HCH6g1130 | 274 | Gene3D | - | 21 | 133 | - | - | |
| HCH6g1130 | 274 | SUPERFAMILY | t-snare proteins | 24 | 236 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| HCH6g1130 | 274 | CDD | SynN | 24 | 159 | IPR006011 | GO:0016020(InterPro) | |
| HCH6g1130 | 274 | PANTHER | SYNTAXIN | 36 | 263 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| HCH6g1130 | 274 | SMART | tSNARE_6 | 176 | 243 | IPR000727 | - | |
| HCH6g1130 | 274 | FunFam | Syntaxin-22 like | 21 | 134 | - | - | |
| HCH6g1130 | 274 | CDD | SNARE_Qa | 184 | 242 | - | - |
Pathway information