Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1143 ATGGGTAGCAGTGAGATGGAGAAACCATCCAAAGATAAGGAGACCAAGACAACTCCTCCTACTACTCAGGAGCAGGCTTCAACTACAAACACTGCGACAGCTAATCCTGACTGGCCGGGTTTTCAGGCGTATTCTCCGATTCCTCCTCATGGTTTTTTGGCATCAAGTCCCCAAGCCCATCCGTATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCCCCTGGAGGCATATATGCTCATCCTTCCATTCCCCCGGGATCATATCCTTTCAGCCCATTTGCAATGCCTTCTCCAAATGGCATTACTGAGGCTTCTGGGAACACAGCAGGCAGCGCAGAAGGAGAGGTTAAGCATCATGAAGTGAAGGAAAAGTTGCCAATTAAAAGATCAAAAGGAAGTTTGGGAAGCTTGAGCATGATTACTGGGAAGAATAATGAGATTGGTAAAACATCTGGAACATCTGCCAATGGAGCGTACTCTAAGAGTGCTGAGAGTGCCAGTGAAGGTACAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACAACCTAACTTAGGTTCCAGGCAAGACTCTTTGGAAGTTGAAGCAGCTCAGAACGGTAACTCTATGCATGGTACTCAGAATGGAGGACCCAATACTCAAGCCATGGCTGTCATTCCATTGGCACCTGCTGGAGTTCCTGGCCCCACTACCAACTTAAATATTGGAATGGACTATTGGGGTGCGTCATCGACTATGCCTGCGTTGCGTGGAAAGGTTCCTTCAACTCCTGTTGCTGGAGGAATGGTAACTACTGGATCACGGGATAGCGTACAGTCACAGCTTTGGTTGCAGGATGAGAGGGAGCTTAAAAGACAGAGAAGAAAGCAATCTAATAGAGAATCCGCACGACGTTCCCGGTTACGCAAGCAGGCAGAATGTGATGAACTTGCACATCGAGCTGAAGCGTTACAAGAAGAGAATGCCAGTCTTAGGTCAGAAGTAATCCGTATAAGGGGTGAATATGAACAACTACTTTCAGAGAATGCCTCTCTAAAGGAGAGACTCGGAGAAATTCCTGGAAATGAAGGCAGGAATGGCCAGCGTTTGAGTAACGAAAGCACACAACTTACAGAGTCTGAGGTTGGGAAGGGTGGTAACTAG 1182 47.12 MGSSEMEKPSKDKETKTTPPTTQEQASTTNTATANPDWPGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSAEGEVKHHEVKEKLPIKRSKGSLGSLSMITGKNNEIGKTSGTSANGAYSKSAESASEGTSEGSDANSQNDSQPNLGSRQDSLEVEAAQNGNSMHGTQNGGPNTQAMAVIPLAPAGVPGPTTNLNIGMDYWGASSTMPALRGKVPSTPVAGGMVTTGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVIRIRGEYEQLLSENASLKERLGEIPGNEGRNGQRLSNESTQLTESEVGKGGN 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45998276 46002248 - evm.model.ptg000003l.649 HCH6g1143 546637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1143 393 MobiDBLite consensus disorder prediction 1 43 - -
HCH6g1143 393 Pfam Disordered region downstream of MFMR 135 257 - -
HCH6g1143 393 MobiDBLite consensus disorder prediction 371 393 - -
HCH6g1143 393 SMART brlzneu 293 357 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1143 393 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 370 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
HCH6g1143 393 MobiDBLite consensus disorder prediction 146 200 - -
HCH6g1143 393 MobiDBLite consensus disorder prediction 117 200 - -
HCH6g1143 393 MobiDBLite consensus disorder prediction 1 18 - -
HCH6g1143 393 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 300 315 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1143 393 MobiDBLite consensus disorder prediction 125 141 - -
HCH6g1143 393 CDD bZIP_plant_GBF1 298 348 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1143 393 Coils Coil 313 361 - -
HCH6g1143 393 Pfam bZIP transcription factor 293 355 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1143 393 MobiDBLite consensus disorder prediction 361 393 - -
HCH6g1143 393 Gene3D - 296 349 - -
HCH6g1143 393 MobiDBLite consensus disorder prediction 19 38 - -
HCH6g1143 393 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 295 358 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1143 393 MobiDBLite consensus disorder prediction 295 315 - -
HCH6g1143 393 Pfam G-box binding protein MFMR 1 96 IPR012900 -
HCH6g1143 393 SUPERFAMILY Leucine zipper domain 296 352 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0341 HCH-Chr9:2123385 HCH6g1143 HCH-Chr6:45998276 7.00E-07 dispersed
HCH14g0552 HCH-Chr14:34477955 HCH6g1143 HCH-Chr6:45998276 1.10E-31 transposed
HCH7g1676 HCH-Chr7:48729875 HCH6g1143 HCH-Chr6:45998276 6.70E-25 transposed
HCH5g0239 HCH-Chr5:1375513 HCH6g1143 HCH-Chr6:45998276 5.50E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33755 PF16596 MFMR_assoc 5.40E-45 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1143 K09060 - csv:101206627 655.981