Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1161 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGAAGGAGAAGACGAGGGTGGTGCGCGTGGGAGTGGCACGCCTAGCACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATCAAGGACATGGCATTGAAATTCTCTGGTGCTTACAGGCAATGCAAACCCTGCACAGGCTCCAGTAGCTACAAGAAAGGACAAAGACCCTACCCAGATTTTGACACTGCTTCAGAAGGTGTTCCATTTCCCTACATAGGAGGAGCAAGTGCTAGTTCAACTCCTGCCTGGGATTTCCCAACTGCTAGTCACCACCACCCACGTACAAGATCTGACTCAAGATTTAAAGGAGTTTTTAGAGGTGATCAAACCCCTGGAGGAGATTCAGTATCAGCATGTGATGTAGTGCTTGAGGATGAGGATGAACAAAAAGAGTGGATGGCAGAAGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCTTACCCAATGGAGGAAATGATCTCAAGCGAATTCGTTTCAATCGAGAAATGTTTAACAAGTGGCAAGCTCAAAGATGGTGGGGAGAGAACTATGATAGAATAACGGAACTCTATAATGTTCAGAGATTTAACCAACAAGCTCTTCATACGCCAACCAGAACTGAGGACGGGAGAGATTCTTCTTACTCAACAAGGATGGGAAGGGACAGTCCGACGGCTAATAAAGATTGGACGCCAAGGAATTATAGACCCTCCGGAAGTAAAGGTTATTTTCCATCCGAGCATTTTGATCAAGGAAGCAGCCACCAGTATGCAGGATCAAGTGCCTATCCTGCAGGCGGTCCCAAAGGTGAAATGTCATCTATGGAAGCATCACGCACGACTACCTCTTCGAGAGATGAACCTTCGATCTCCATTAGCAATGCAAGTGATATTGAGGCGGAATGGGTTGAAGAAGACGAACCCGGGGTTTATATTACAATCAGACAGCTTGTCGATGGCACTAGAGAGCTCCGTCGTGTGAGATTCAGCCGTGAAAGGTTTGGAGAGATGAATGCTAAGCAGTGGTGGGAACAGAACAGGGCCAGAATACAAGCTCAATACCTTTAA 1083 46.63 MFTCIACTKQTDEGEDEGGARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPFPYIGGASASSTPAWDFPTASHHHPRTRSDSRFKGVFRGDQTPGGDSVSACDVVLEDEDEQKEWMAEVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPTRTEDGRDSSYSTRMGRDSPTANKDWTPRNYRPSGSKGYFPSEHFDQGSSHQYAGSSAYPAGGPKGEMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEQNRARIQAQYL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46131953 46135412 + evm.model.ptg000003l.631 HCH6g1161 546655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1161 360 MobiDBLite consensus disorder prediction 279 298 - -
HCH6g1161 360 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 360 IPR044532 -
HCH6g1161 360 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
HCH6g1161 360 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
HCH6g1161 360 ProSiteProfiles BRX domain profile. 305 360 IPR013591 -
HCH6g1161 360 Pfam Transcription factor regulating root and shoot growth via Pin3 304 359 IPR013591 -
HCH6g1161 360 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
HCH6g1161 360 MobiDBLite consensus disorder prediction 101 115 - -
HCH6g1161 360 MobiDBLite consensus disorder prediction 206 298 - -
HCH6g1161 360 MobiDBLite consensus disorder prediction 99 128 - -
HCH6g1161 360 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0557 HCH-Chr10:4483119 HCH6g1161 HCH-Chr6:46131953 1.90E-79 dispersed
HCH6g1161 HCH-Chr6:46131953 HCH8g0398 HCH-Chr8:35957114 1.20E-14 dispersed
HCH6g1161 HCH-Chr6:46131953 HCH4g1503 HCH-Chr4:11457757 9.80E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1161 - - - 0.0