Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g1164 | ATGGAGGCGTTGCCGCCGGTTAAGCTAACGGAAGGATCGGTATTAGTGATATGCAAAAGGGAAGTTATGTCAGAAGTGTTTCAGCCAATTGTTCAAGTTATAGACCTGAAATTGGTTAACACTCAAGCCCAATCCGGCACCGAGAGGTACCGGCTTTTGCTTTCCGATGGAACCCACTTTCAGCAAGGAATGCTCGGAACTCAGCTTAATGATTGGGTTAAAACCGGAAAGTTACAGAAAGGTTCCGTCGTTCTACTCCGGCAATATGTCTGCAATCCCGTTCAAGATCGCCTGATTATAATTGTCATTGACATGGAAATACTTGTAGAAGTTTGTGACTTCATTGGTCAGCCTGTACCAGCAACAAAATCATTAACAGGGACAACCGGTGGAAATACCCAACCCTCTATGGGGCCTCCGCCCAGCAGTGGGCTAATGAGTAACACAAATGTACCGAGTGCATCTTTTGAATTGCCTATGGTTAATCAATCGCATGTAGGATCTTATTCAAGTAATCACGAGCCTGGAAGATACAGTGCATCGATTGCGCCTCCTCTTTACCCTAAGACTGACCCTGGAACAAGGTTTAATGGGTCATCTACATCTCCTTTAAGTGGGTCATACAGTGATCAGAAGATGGCATATCACAACAATGGACCAGATAATTCAAGGCCACCTTCGAATGCGTACACCCGTCCTCAGCTAACATATCAGCAGCCACCTCCAATGTATATGAATAGAGGACCAGTGGCTAAAAATGAAGCTCCCCCGAGGATAATGCCTATTTCTGCTTTAAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTGACTGCAAAAGGAGAACTTAGACACTATAATAATCCTCGTGGTGATGGAAAAGTGTTTTCATTTGATCTTCTTGATTCATACGGTGGAGAAATACGAGTAACATGCTTCAATACGGTAGCTGATCAGTTTTACGACCTGATCGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAACTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACCATGAAATATTTCTTGAGAGCACATCAACTATACAGCCTTGCTTAGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTTCGTTTAATCAGTGATATCGAAGGATTAGATAACAACAGTGTTGTAGATGTAATTGGTATTGTTTCATCCATTAGTCCTGCAACTTCTATAATGAGAAAAAATGGTCTTGAGACTCAGAAGAGATCCCTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAATTAACTCTGTGGGGAAACTTTTGTCATGCAGAAGGGCAAAGATTGCAAAATTTGTGTGACTCGGGGGTATTTCCAGTTTTGGCTGTGAAATCTAGTAGAGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTAAGCTTTTTGTAGATCCAGATTTCCCTGAGGCTCGTAAGCTGAAAGAATGGTTTGAGAAGGAAGGGAGGAGCACCCCATCTGTCTCTATATCCAGGGAAGTTTCTAGCATAGGCAGGATGGATGTCCGTAAGACCATATCTCTGATAAAAGATGAGAAGTTAGGAACCTCTGAAAAGCCAGATTGGATTACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTATACAGCATGTCCTATCATGATTGGGGACCGACAATGCAACAAAAAAGTAACAAATAATGGAGATGGAAAATGGAGATGTGAGAGGTGTGATCAGTCTGTTGAAGAATGTGATTACAGGTACATACTCCAGCTGCAAATACAGGACCATACTGGCTTAACATGGGTAACTGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCTAAAACATTATATTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATTATCCGCAAGGTTCTTTTTACTAAATTTATTTTAAAGTTGAAAATAAAGGAAGAGACATTTAGTGATGAACAGCGTGTAAGGTCAACAGTGGTGAAAGCAGATAAGGTAAATTTTTCATCTGAGTCCAGATTTCTTCTAGATTTGATGGAAAAACTTCGAACAGGGAATTCCAGTTCTATTACCCCAAAGGCAGAGAGCGTTGTCCATAATCCTGGAAGTCACAACACTGGAGTCGGGAATGTTGGCGGTGGACAGTTTTTGTCACCAGCTCGAGGTGTAGGGCATAGTTTCAATGTTTCACCAGTTCGAAGTGTAGGGAATGGTCTCAATGTTTCAACAGCTCAAAGTGTAGGGATCAGTCTCAATATTTCACCAGCTCGAAGTGTATTAGGGAATAATAGTCTCAATATTTCACCAGTGCGAAGTGTAGTACAGAACAATAGTCTCAATGTTTCACCAGCGCGAAGTGTAGTAGGGAATAATAGTCTCAATGTTGGTAGAGAATTTGGTGCTCCAAATCAAGGGGGTCAGTATGGAAATCAATACAACAATTCCGGACTTTCTTCATCCATGCCGCTCAACTCACAAATTCATTGTAGCAGCTGTGGGAGCTCCGGTCACAGCTCTATGAACTGCCCGAGTATCATGGGTGCTCCTGCTCCTGCACATCCCGTTGGAGGGATTTATTCAAACAGAGGTTCTGGTCCTAGTCCTACTAGTGGTGTCACTGGTGAATGCTTCAAATGCCATCAGACAGGGCATTGGGCTAGAGATTGCCCTGGTTTGGCCACTGTCCCTCCAGCTTATGGTAGCAGTGGGTTCACAGCAAGGTAA | 2781 | 42.43 | MEALPPVKLTEGSVLVICKREVMSEVFQPIVQVIDLKLVNTQAQSGTERYRLLLSDGTHFQQGMLGTQLNDWVKTGKLQKGSVVLLRQYVCNPVQDRLIIIVIDMEILVEVCDFIGQPVPATKSLTGTTGGNTQPSMGPPPSSGLMSNTNVPSASFELPMVNQSHVGSYSSNHEPGRYSASIAPPLYPKTDPGTRFNGSSTSPLSGSYSDQKMAYHNNGPDNSRPPSNAYTRPQLTYQQPPPMYMNRGPVAKNEAPPRIMPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSYGGEIRVTCFNTVADQFYDLIESGKVYFISKGNLKPAQKNFNHLKNDHEIFLESTSTIQPCLEDDQSIPQQQFHFRLISDIEGLDNNSVVDVIGIVSSISPATSIMRKNGLETQKRSLQLKDMSGRSVELTLWGNFCHAEGQRLQNLCDSGVFPVLAVKSSRVSDFNGKAVGTISTSKLFVDPDFPEARKLKEWFEKEGRSTPSVSISREVSSIGRMDVRKTISLIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVEECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKTLYYLKYEEQDDEKFAEIIRKVLFTKFILKLKIKEETFSDEQRVRSTVVKADKVNFSSESRFLLDLMEKLRTGNSSSITPKAESVVHNPGSHNTGVGNVGGGQFLSPARGVGHSFNVSPVRSVGNGLNVSTAQSVGISLNISPARSVLGNNSLNISPVRSVVQNNSLNVSPARSVVGNNSLNVGREFGAPNQGGQYGNQYNNSGLSSSMPLNSQIHCSSCGSSGHSSMNCPSIMGAPAPAHPVGGIYSNRGSGPSPTSGVTGECFKCHQTGHWARDCPGLATVPPAYGSSGFTAR | 926 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 46151274 | 46154770 | - | evm.model.ptg000003l.628 | HCH6g1164 | 546658 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g1164 | 926 | CDD | RPA1_DBD_B | 393 | 500 | - | - | |
| HCH6g1164 | 926 | SUPERFAMILY | Nucleic acid-binding proteins | 524 | 701 | IPR012340 | - | |
| HCH6g1164 | 926 | SMART | c2hcfinal6 | 894 | 910 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | SMART | c2hcfinal6 | 847 | 863 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | SUPERFAMILY | Retrovirus zinc finger-like domains | 882 | 913 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | FunFam | Replication protein A subunit | 510 | 701 | - | - | |
| HCH6g1164 | 926 | Gene3D | - | 258 | 367 | IPR012340 | - | |
| HCH6g1164 | 926 | CDD | RPA1_DBD_A | 261 | 364 | - | - | |
| HCH6g1164 | 926 | Pfam | Zinc knuckle | 894 | 909 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | FunFam | Replication protein A subunit | 258 | 368 | - | - | |
| HCH6g1164 | 926 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 261 | 679 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| HCH6g1164 | 926 | Gene3D | - | 7 | 122 | IPR012340 | - | |
| HCH6g1164 | 926 | Pfam | Replication factor-A C terminal domain | 543 | 694 | IPR013955 | - | |
| HCH6g1164 | 926 | ProSiteProfiles | Zinc finger CCHC-type profile. | 895 | 909 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | FunFam | Replication protein A subunit | 371 | 509 | - | - | |
| HCH6g1164 | 926 | ProSiteProfiles | Zinc finger CCHC-type profile. | 848 | 863 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH6g1164 | 926 | FunFam | Replication protein A subunit | 8 | 122 | - | - | |
| HCH6g1164 | 926 | Gene3D | - | 840 | 910 | - | - | |
| HCH6g1164 | 926 | NCBIfam | replication factor-a protein 1 (rpa1) | 219 | 700 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| HCH6g1164 | 926 | SUPERFAMILY | Nucleic acid-binding proteins | 377 | 505 | IPR012340 | - | |
| HCH6g1164 | 926 | MobiDBLite | consensus disorder prediction | 125 | 151 | - | - | |
| HCH6g1164 | 926 | Pfam | Replication factor-A protein 1, N-terminal domain | 9 | 109 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| HCH6g1164 | 926 | CDD | RPA1N | 12 | 109 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| HCH6g1164 | 926 | Gene3D | - | 510 | 701 | IPR012340 | - | |
| HCH6g1164 | 926 | CDD | RPA1_DBD_C | 527 | 700 | IPR047192 | - | |
| HCH6g1164 | 926 | Pfam | OB-fold nucleic acid binding domain | 272 | 344 | IPR004365 | GO:0003676(InterPro) | |
| HCH6g1164 | 926 | Gene3D | - | 371 | 509 | IPR012340 | - | |
| HCH6g1164 | 926 | Pfam | Replication protein A OB domain | 382 | 486 | IPR031657 | - | |
| HCH6g1164 | 926 | MobiDBLite | consensus disorder prediction | 166 | 244 | - | - | |
| HCH6g1164 | 926 | SUPERFAMILY | Nucleic acid-binding proteins | 258 | 371 | IPR012340 | - | |
| HCH6g1164 | 926 | MobiDBLite | consensus disorder prediction | 193 | 241 | - | - | |
| HCH6g1164 | 926 | SUPERFAMILY | Nucleic acid-binding proteins | 7 | 116 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0561 | HCH-Chr10:4515829 | HCH6g1164 | HCH-Chr6:46151274 | 1.90E-212 | dispersed | |
| HCH6g1164 | HCH-Chr6:46151274 | HCH8g1241 | HCH-Chr8:47744234 | 1.90E-83 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g1164 | K07466 | - | csv:101211358 | 1249.19 |