Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1164 ATGGAGGCGTTGCCGCCGGTTAAGCTAACGGAAGGATCGGTATTAGTGATATGCAAAAGGGAAGTTATGTCAGAAGTGTTTCAGCCAATTGTTCAAGTTATAGACCTGAAATTGGTTAACACTCAAGCCCAATCCGGCACCGAGAGGTACCGGCTTTTGCTTTCCGATGGAACCCACTTTCAGCAAGGAATGCTCGGAACTCAGCTTAATGATTGGGTTAAAACCGGAAAGTTACAGAAAGGTTCCGTCGTTCTACTCCGGCAATATGTCTGCAATCCCGTTCAAGATCGCCTGATTATAATTGTCATTGACATGGAAATACTTGTAGAAGTTTGTGACTTCATTGGTCAGCCTGTACCAGCAACAAAATCATTAACAGGGACAACCGGTGGAAATACCCAACCCTCTATGGGGCCTCCGCCCAGCAGTGGGCTAATGAGTAACACAAATGTACCGAGTGCATCTTTTGAATTGCCTATGGTTAATCAATCGCATGTAGGATCTTATTCAAGTAATCACGAGCCTGGAAGATACAGTGCATCGATTGCGCCTCCTCTTTACCCTAAGACTGACCCTGGAACAAGGTTTAATGGGTCATCTACATCTCCTTTAAGTGGGTCATACAGTGATCAGAAGATGGCATATCACAACAATGGACCAGATAATTCAAGGCCACCTTCGAATGCGTACACCCGTCCTCAGCTAACATATCAGCAGCCACCTCCAATGTATATGAATAGAGGACCAGTGGCTAAAAATGAAGCTCCCCCGAGGATAATGCCTATTTCTGCTTTAAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTGACTGCAAAAGGAGAACTTAGACACTATAATAATCCTCGTGGTGATGGAAAAGTGTTTTCATTTGATCTTCTTGATTCATACGGTGGAGAAATACGAGTAACATGCTTCAATACGGTAGCTGATCAGTTTTACGACCTGATCGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAACTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACCATGAAATATTTCTTGAGAGCACATCAACTATACAGCCTTGCTTAGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTTCGTTTAATCAGTGATATCGAAGGATTAGATAACAACAGTGTTGTAGATGTAATTGGTATTGTTTCATCCATTAGTCCTGCAACTTCTATAATGAGAAAAAATGGTCTTGAGACTCAGAAGAGATCCCTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAATTAACTCTGTGGGGAAACTTTTGTCATGCAGAAGGGCAAAGATTGCAAAATTTGTGTGACTCGGGGGTATTTCCAGTTTTGGCTGTGAAATCTAGTAGAGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTAAGCTTTTTGTAGATCCAGATTTCCCTGAGGCTCGTAAGCTGAAAGAATGGTTTGAGAAGGAAGGGAGGAGCACCCCATCTGTCTCTATATCCAGGGAAGTTTCTAGCATAGGCAGGATGGATGTCCGTAAGACCATATCTCTGATAAAAGATGAGAAGTTAGGAACCTCTGAAAAGCCAGATTGGATTACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTATACAGCATGTCCTATCATGATTGGGGACCGACAATGCAACAAAAAAGTAACAAATAATGGAGATGGAAAATGGAGATGTGAGAGGTGTGATCAGTCTGTTGAAGAATGTGATTACAGGTACATACTCCAGCTGCAAATACAGGACCATACTGGCTTAACATGGGTAACTGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCTAAAACATTATATTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATTATCCGCAAGGTTCTTTTTACTAAATTTATTTTAAAGTTGAAAATAAAGGAAGAGACATTTAGTGATGAACAGCGTGTAAGGTCAACAGTGGTGAAAGCAGATAAGGTAAATTTTTCATCTGAGTCCAGATTTCTTCTAGATTTGATGGAAAAACTTCGAACAGGGAATTCCAGTTCTATTACCCCAAAGGCAGAGAGCGTTGTCCATAATCCTGGAAGTCACAACACTGGAGTCGGGAATGTTGGCGGTGGACAGTTTTTGTCACCAGCTCGAGGTGTAGGGCATAGTTTCAATGTTTCACCAGTTCGAAGTGTAGGGAATGGTCTCAATGTTTCAACAGCTCAAAGTGTAGGGATCAGTCTCAATATTTCACCAGCTCGAAGTGTATTAGGGAATAATAGTCTCAATATTTCACCAGTGCGAAGTGTAGTACAGAACAATAGTCTCAATGTTTCACCAGCGCGAAGTGTAGTAGGGAATAATAGTCTCAATGTTGGTAGAGAATTTGGTGCTCCAAATCAAGGGGGTCAGTATGGAAATCAATACAACAATTCCGGACTTTCTTCATCCATGCCGCTCAACTCACAAATTCATTGTAGCAGCTGTGGGAGCTCCGGTCACAGCTCTATGAACTGCCCGAGTATCATGGGTGCTCCTGCTCCTGCACATCCCGTTGGAGGGATTTATTCAAACAGAGGTTCTGGTCCTAGTCCTACTAGTGGTGTCACTGGTGAATGCTTCAAATGCCATCAGACAGGGCATTGGGCTAGAGATTGCCCTGGTTTGGCCACTGTCCCTCCAGCTTATGGTAGCAGTGGGTTCACAGCAAGGTAA 2781 42.43 MEALPPVKLTEGSVLVICKREVMSEVFQPIVQVIDLKLVNTQAQSGTERYRLLLSDGTHFQQGMLGTQLNDWVKTGKLQKGSVVLLRQYVCNPVQDRLIIIVIDMEILVEVCDFIGQPVPATKSLTGTTGGNTQPSMGPPPSSGLMSNTNVPSASFELPMVNQSHVGSYSSNHEPGRYSASIAPPLYPKTDPGTRFNGSSTSPLSGSYSDQKMAYHNNGPDNSRPPSNAYTRPQLTYQQPPPMYMNRGPVAKNEAPPRIMPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSYGGEIRVTCFNTVADQFYDLIESGKVYFISKGNLKPAQKNFNHLKNDHEIFLESTSTIQPCLEDDQSIPQQQFHFRLISDIEGLDNNSVVDVIGIVSSISPATSIMRKNGLETQKRSLQLKDMSGRSVELTLWGNFCHAEGQRLQNLCDSGVFPVLAVKSSRVSDFNGKAVGTISTSKLFVDPDFPEARKLKEWFEKEGRSTPSVSISREVSSIGRMDVRKTISLIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVEECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKTLYYLKYEEQDDEKFAEIIRKVLFTKFILKLKIKEETFSDEQRVRSTVVKADKVNFSSESRFLLDLMEKLRTGNSSSITPKAESVVHNPGSHNTGVGNVGGGQFLSPARGVGHSFNVSPVRSVGNGLNVSTAQSVGISLNISPARSVLGNNSLNISPVRSVVQNNSLNVSPARSVVGNNSLNVGREFGAPNQGGQYGNQYNNSGLSSSMPLNSQIHCSSCGSSGHSSMNCPSIMGAPAPAHPVGGIYSNRGSGPSPTSGVTGECFKCHQTGHWARDCPGLATVPPAYGSSGFTAR 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46151274 46154770 - evm.model.ptg000003l.628 HCH6g1164 546658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1164 926 CDD RPA1_DBD_B 393 500 - -
HCH6g1164 926 SUPERFAMILY Nucleic acid-binding proteins 524 701 IPR012340 -
HCH6g1164 926 SMART c2hcfinal6 894 910 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 SMART c2hcfinal6 847 863 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 SUPERFAMILY Retrovirus zinc finger-like domains 882 913 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 FunFam Replication protein A subunit 510 701 - -
HCH6g1164 926 Gene3D - 258 367 IPR012340 -
HCH6g1164 926 CDD RPA1_DBD_A 261 364 - -
HCH6g1164 926 Pfam Zinc knuckle 894 909 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 FunFam Replication protein A subunit 258 368 - -
HCH6g1164 926 PANTHER REPLICATION FACTOR A 1, RFA1 261 679 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
HCH6g1164 926 Gene3D - 7 122 IPR012340 -
HCH6g1164 926 Pfam Replication factor-A C terminal domain 543 694 IPR013955 -
HCH6g1164 926 ProSiteProfiles Zinc finger CCHC-type profile. 895 909 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 FunFam Replication protein A subunit 371 509 - -
HCH6g1164 926 ProSiteProfiles Zinc finger CCHC-type profile. 848 863 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH6g1164 926 FunFam Replication protein A subunit 8 122 - -
HCH6g1164 926 Gene3D - 840 910 - -
HCH6g1164 926 NCBIfam replication factor-a protein 1 (rpa1) 219 700 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH6g1164 926 SUPERFAMILY Nucleic acid-binding proteins 377 505 IPR012340 -
HCH6g1164 926 MobiDBLite consensus disorder prediction 125 151 - -
HCH6g1164 926 Pfam Replication factor-A protein 1, N-terminal domain 9 109 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
HCH6g1164 926 CDD RPA1N 12 109 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
HCH6g1164 926 Gene3D - 510 701 IPR012340 -
HCH6g1164 926 CDD RPA1_DBD_C 527 700 IPR047192 -
HCH6g1164 926 Pfam OB-fold nucleic acid binding domain 272 344 IPR004365 GO:0003676(InterPro)
HCH6g1164 926 Gene3D - 371 509 IPR012340 -
HCH6g1164 926 Pfam Replication protein A OB domain 382 486 IPR031657 -
HCH6g1164 926 MobiDBLite consensus disorder prediction 166 244 - -
HCH6g1164 926 SUPERFAMILY Nucleic acid-binding proteins 258 371 IPR012340 -
HCH6g1164 926 MobiDBLite consensus disorder prediction 193 241 - -
HCH6g1164 926 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1164 K07466 - - csv:101211358 1249.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0561 HCH-Chr10:4515829 HCH6g1164 HCH-Chr6:46151274 1.90E-212 dispersed
HCH6g1164 HCH-Chr6:46151274 HCH8g1241 HCH-Chr8:47744234 1.90E-83 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0450 . 2 864 Core DNA Replication Machinery Family AT4G14700 60.8 3.0e-287 984.6
HCH8g0450 . 1 864 Core DNA Replication Machinery Family AT4G12620 61.8 6.9e-292 1000.0
HCH4g0661 . 2 361 Core DNA Replication Machinery Family AT2G37560 68.3 3.9e-143 504.6
HCH13g1125 . 1 511 Core DNA Replication Machinery Family AT4G29910 57.9 6.1e-170 594.3
HCH4g0881 . 1 274 Core DNA Replication Machinery Family AT1G26840 66.4 3.5e-97 351.7
HCH7g0032 . 1 807 Core DNA Replication Machinery Family AT1G79150 57.5 2.6e-246 848.6
HCH5g1143 . 4 929 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1352.8
HCH14g1057 . 1 578 Core DNA Replication Machinery Family AT5G46280 80.1 2.2e-268 921.4
HCH7g0533 . 1 843 Core DNA Replication Machinery Family AT2G16440 72.7 0.0e+00 1184.5
HCH10g0354 . 1 737 Core DNA Replication Machinery Family AT2G07690 76.9 0.0e+00 1097.8
HCH14g1202 . 6 829 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1169.8
HCH4g1075 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.3 0.0e+00 1204.9
HCH2g1033 . 39 523 Core DNA Replication Machinery Family AT2G29680 58.8 1.3e-158 556.6
HCH2g1033 . 27 484 Core DNA Replication Machinery Family AT1G07270 59.0 2.0e-142 502.7
HCH5g1013 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 6.7e-260 893.3
HCH11g0249 . 27 821 Core DNA Replication Machinery Family AT3G09660 71.1 0.0e+00 1083.2
HCH4g1702 . 6 474 Core DNA Replication Machinery Family AT2G14050 77.9 5.1e-213 737.6
HCH2g0555 . 6 408 Core DNA Replication Machinery Family AT2G20980 55.8 1.4e-117 419.9
HCH12g0839 . 2 971 Core DNA Replication Machinery Family AT1G77320 50.8 1.8e-265 912.5
HCH4g1324 . 1 199 Core DNA Replication Machinery Family AT1G80190 69.3 2.0e-78 288.9
HCH11g0967 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 9.8e-59 223.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT1G19080 65.8 1.1e-64 243.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT3G55490 65.8 1.1e-64 243.0
HCH7g1637 . 15 162 Core DNA Replication Machinery Family AT5G49010 63.3 4.0e-49 191.4
HCH2g0050 . 11 1542 Core DNA Replication Machinery Family AT5G67100 61.6 0.0e+00 1795.8
HCH6g1471 . 2 621 Core DNA Replication Machinery Family AT1G67630 62.0 1.3e-221 766.1
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH6g1260 . 1 453 Core DNA Replication Machinery Family AT5G41880 64.0 1.3e-175 612.8
HCH14g0101 . 17 1087 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1769.6
HCH11g0564 . 1 441 Core DNA Replication Machinery Family AT2G42120 77.6 9.2e-206 713.0
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH2g1255 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.9 0.0e+00 2978.3
HCH2g1255 . 24 2208 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2946.8
HCH2g1306 . 1 938 Core DNA Replication Machinery Family AT5G22010 64.1 1.4e-309 1058.9
HCH6g0944 . 1 332 Core DNA Replication Machinery Family AT1G63160 91.0 7.0e-174 606.7
HCH9g0927 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.9 1.5e-179 625.5
HCH12g0832 . 1 334 Core DNA Replication Machinery Family AT1G21690 80.9 4.0e-153 537.7
HCH13g0142 . 1 354 Core DNA Replication Machinery Family AT1G77470 76.4 4.4e-153 537.7
HCH10g0561 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 3.9e-255 877.5
HCH6g1164 . 33 698 Core DNA Replication Machinery Family AT2G06510 53.0 2.0e-203 705.7
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G08020 71.6 3.1e-257 884.4
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT5G45400 55.0 4.8e-227 784.6
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G61000 69.3 2.1e-251 865.1
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT4G19130 58.6 1.1e-233 806.6
HCH8g0012 . 1 359 Core DNA Replication Machinery Family AT5G26680 87.7 1.3e-180 629.4
HCH7g1488 . 1 1110 Core DNA Replication Machinery Family AT1G08840 54.2 2.0e-312 1068.5
HCH2g1211 . 145 781 Core DNA Replication Machinery Family AT1G08130 77.1 1.0e-292 1002.7
HCH2g1211 . 181 781 Core DNA Replication Machinery Family AT1G49250 68.3 1.9e-239 825.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35