Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1173 ATGGCTTGCTCGTACCGTGCATGTAATTATCTAATCGTTCTCGCGATTCTTTCATTCGGGTGCCTATTTGCAATTTCCATTGCGAAAGAGGAAGCTTCCAAGTTAGGAACAGTGATTGGAATAGATCTTGGCACAACTTACTCCTGTGTTGGAGTGTACAAGAATGGACATGTTGAAATTATAGCCAACGATCAAGGAAATCGTATCACCCCATCATGGGTTGGTTTCTCTGATGATGAGAGATTGATTGGTGAGGCTGCTAAGAATCAGGCAGCGGTGAACCCCGAACGGACCGTCTTCGATGTCAAGAGATTGATTGGGAGAAAGTTTGATGATAAAGAGGTGCAGAAGGATTTAAAACTTTTTCCTTTTAAAATCGTAGATAAAGATGGAAAGCCCTATATACAGGTGAAGATCAAGGATGGGGAAACCAAAGTGTTTAGCCCGGAGGAGATCAGCGCCATGATTTTGACCAAAATGAAGGAAACAGCTGAAGCATTCCTTGGAAAAACAATCAAGGATGCTGTTGTAACAGTTCCTGCGTACTTTAATGATGCCCAGAGGCAGGCTACCAAGGATGCTGGAGTAATAGCTGGGCTCAATGTAGCCAGGATTATCAATGAACCAACCGCGGCTGCTATAGCCTACGGCTTGGACAAGAAAGGCGGGGAGAAGAATATTCTTGTCTTTGACCTTGGTGGTGGGACATTTGACGTTAGTATCTTGACAATTGATAATGGTGTTTTTGAGGTTTTGGCCACAAATGGAGACACTCATTTGGGAGGTGAGGATTTTGATCAGAGGATTATGGAGTATTTCATTAAATTAATAAAGAAGAAGCATGGAAAGGATATCAGCAAGGACAACAGAGCCCTTGGAAAGTTGAGAAGGGAATGTGAGCGTGCAAAGAGAGCTCTGAGTAGCCAACATCAGGTCCGTGTGGAGATCGAATCACTCTTTGACGGAGTCGACTTGTCTGAGCCACTGACCCGAGCTCGTTTCGAAGAATTGAACAATGACTTATTCAGAAAGACAATGGGACCAGTGAAGAAGGCCATGACAGATGCTGGGCTGGAGAAGAACCAAATTGATGAAATTGTCCTTGTTGGTGGAAGCACCAGAATCCCAAAAGTTCAACAACTTCTAAAGGACTATTTTGATGGAAAGGAACCAAATAAGGGTGTTAACCCAGATGAGGCAGTTGCCTATGGTGCTGCTGTACAAGGAAGCATTTTAAGCGGAGACGGCGGTGAAGAAACCAAGGACATTCTTCTCCTTGATGTCGCTCCTCTTACTCTCGGAATCGAAACCGTCGGTGGGGTGATGACCAAATTGATCCCAAGAAACAGTGTCATCCCAACCAAGAAATCTCAAGTTTTTACTACTTATCAGGATCAGCAAACTACAGTATCCATTCAGGTATTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCAGGATGCTAGGAAATTTTGAATTAACTGGACTTCCTCCGGCTCCAAGGGGAACCCCTCAAATTGAAGTGACATTTGAAGTTGATGCAAATGGTATCCTAAATGTGAAGGCCCAAGACAAAGGCACGGGAAAATCTGAAAAGATAACCATCACCAACGACAAGGGTCGGCTTAGCCAAGAGGAGATTGATAGGATGGTTCGTGAGGCAGAGGAATTTGCAGAGGAAGACAAGAAGGTTAAGGAAAAGATTGACGCTCGAAACAGCTTGGAGACGTACGTTTACAATCTGAAAAACCAGGTGAACGATAAAGACAAACTCGCCGACAAGCTTGAGTCCGATGAGAAGGAGAAGATCGAGACTGCTGTGAAGGAGGCTCTTGAGTGGCTTGATGATAACCAGAGTAATGCTGACAAGGAAGAATATGAAGAGAAGCTCAAAGAGGTGGAAGCCGTCTGTAACCCCATCATCACCGCCGTTTATCAGAGGTCTGGTGGAGCTGCTGCCGGTGCCGGAGAAGATGAAGATTCACACGATGAGCTCTGA 1998 44.74 MACSYRACNYLIVLAILSFGCLFAISIAKEEASKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFSDDERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDLKLFPFKIVDKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKTIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMTDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGDGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNSVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRMLGNFELTGLPPAPRGTPQIEVTFEVDANGILNVKAQDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNLKNQVNDKDKLADKLESDEKEKIETAVKEALEWLDDNQSNADKEEYEEKLKEVEAVCNPIITAVYQRSGGAAAGAGEDEDSHDEL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46205040 46207927 - evm.model.ptg000003l.619 HCH6g1173 546667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1173 665 Coils Coil 285 305 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 503 519 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 175 195 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 363 379 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 395 415 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 235 245 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 37 50 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 422 441 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 87 95 - -
HCH6g1173 665 PRINTS 70kDa heat shock protein signature 65 77 - -
HCH6g1173 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 575 IPR029047 -
HCH6g1173 665 Pfam Hsp70 protein 38 646 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
HCH6g1173 665 CDD HSPA5-like_NBD 36 410 IPR042050 -
HCH6g1173 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 571 IPR029047 -
HCH6g1173 665 Coils Coil 616 636 - -
HCH6g1173 665 Gene3D Actin; Chain A, domain 4 261 344 - -
HCH6g1173 665 Coils Coil 581 601 - -
HCH6g1173 665 Gene3D - 39 410 - -
HCH6g1173 665 FunFam Heat shock 70 kDa 261 344 - -
HCH6g1173 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
HCH6g1173 665 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
HCH6g1173 665 Gene3D - 221 395 - -
HCH6g1173 665 Coils Coil 547 567 - -
HCH6g1173 665 Gene3D - 572 647 IPR029048 -
HCH6g1173 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
HCH6g1173 665 FunFam Heat shock protein 70 39 226 - -
HCH6g1173 665 FunFam Chaperone protein HscA homolog 227 275 - -
HCH6g1173 665 FunFam Luminal-binding protein 5 571 647 - -
HCH6g1173 665 FunFam Heat shock 70 kDa 417 571 - -
HCH6g1173 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 651 IPR029048 -
HCH6g1173 665 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
HCH6g1173 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
HCH6g1173 665 FunFam Heat shock protein ssb1 100 155 - -
HCH6g1173 665 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
HCH6g1173 665 PANTHER HSC70CB, ISOFORM G-RELATED 36 648 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0471 HCH-Chr13:3261085 HCH6g1173 HCH-Chr6:46205040 5.30E-218 dispersed
HCH5g0656 HCH-Chr5:4740164 HCH6g1173 HCH-Chr6:46205040 0.00E+00 dispersed
HCH6g1173 HCH-Chr6:46205040 HCH8g0108 HCH-Chr8:4325933 2.40E-290 dispersed
HCH6g1173 HCH-Chr6:46205040 HCH13g0464 HCH-Chr13:3227664 8.30E-219 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1173 K09490 - mdm:103400676 1201.42