Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1178 ATGGCCAATCTTGGAAGCTATAGATTCAACTTCCTAGCATTGGCCTTTCAACTTGTCATTTTTATGGAGATGCAGATCCACAGAGTAATCTGCTATCAGTACAAAATTGGAGATTTAGATGCTTGGGGTATTCCCACCAAAGGCAACCCAGAGATCTACACTTATTGGTCCAAATATCACACTCTCAAGATTGGAGATTCCCTCATGTTCTTATACCCACCAAGCCAAGATTCGGTGATTCAAGTCACAGAAGATTCCTACAAAAGCTGCAACCTCAAAGATCCAATCTTGTACATCAACAATGGCAACTCTGTTTTCAACATTACTGGTAAGGGGGAATTCTACTTCACCAGTGGAGCTGATGGTCACTGTGAGAAGAACCAGAAGCTTCATATATCAGTGCTTTCTGGGAACGGGTCTACAAATCCTCCCTCTAATGATGTACTTCCGGAGATCTCACCCTCTTACCCTACAGTTTTTGGTGGAATCCCAGCATCACCCAATGGCAATGCCTCATCCTCATCACGGACGAGAAGGTTTTCGATCTTCGTTGCAGTTTTTGTCGGCCTCTTGGTTTCGATCACGACTCCGTGGCATGATTTGAGGACCATGGTTTAA 618 44.01 MANLGSYRFNFLALAFQLVIFMEMQIHRVICYQYKIGDLDAWGIPTKGNPEIYTYWSKYHTLKIGDSLMFLYPPSQDSVIQVTEDSYKSCNLKDPILYINNGNSVFNITGKGEFYFTSGADGHCEKNQKLHISVLSGNGSTNPPSNDVLPEISPSYPTVFGGIPASPNGNASSSSRTRRFSIFVAVFVGLLVSITTPWHDLRTMV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46241835 46242527 - evm.model.ptg000003l.614 HCH6g1178 546672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1178 205 PANTHER BLUE COPPER PROTEIN 22 150 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH6g1178 205 Gene3D - 32 145 IPR008972 -
HCH6g1178 205 CDD OsENODL1_like 32 135 IPR041846 -
HCH6g1178 205 FunFam Early nodulin-like protein 1 31 139 - -
HCH6g1178 205 ProSiteProfiles Phytocyanin domain profile. 32 136 IPR003245 GO:0009055(InterPro)
HCH6g1178 205 SUPERFAMILY Cupredoxins 31 135 IPR008972 -
HCH6g1178 205 Pfam Plastocyanin-like domain 51 127 IPR003245 GO:0009055(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1178 HCH-Chr6:46241835 HCH12g1062 HCH-Chr12:7980148 1.60E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1178 - - - 0.0