Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1178 ATGGCCAATCTTGGAAGCTATAGATTCAACTTCCTAGCATTGGCCTTTCAACTTGTCATTTTTATGGAGATGCAGATCCACAGAGTAATCTGCTATCAGTACAAAATTGGAGATTTAGATGCTTGGGGTATTCCCACCAAAGGCAACCCAGAGATCTACACTTATTGGTCCAAATATCACACTCTCAAGATTGGAGATTCCCTCATGTTCTTATACCCACCAAGCCAAGATTCGGTGATTCAAGTCACAGAAGATTCCTACAAAAGCTGCAACCTCAAAGATCCAATCTTGTACATCAACAATGGCAACTCTGTTTTCAACATTACTGGTAAGGGGGAATTCTACTTCACCAGTGGAGCTGATGGTCACTGTGAGAAGAACCAGAAGCTTCATATATCAGTGCTTTCTGGGAACGGGTCTACAAATCCTCCCTCTAATGATGTACTTCCGGAGATCTCACCCTCTTACCCTACAGTTTTTGGTGGAATCCCAGCATCACCCAATGGCAATGCCTCATCCTCATCACGGACGAGAAGGTTTTCGATCTTCGTTGCAGTTTTTGTCGGCCTCTTGGTTTCGATCACGACTCCGTGGCATGATTTGAGGACCATGGTTTAA 618 44.01 MANLGSYRFNFLALAFQLVIFMEMQIHRVICYQYKIGDLDAWGIPTKGNPEIYTYWSKYHTLKIGDSLMFLYPPSQDSVIQVTEDSYKSCNLKDPILYINNGNSVFNITGKGEFYFTSGADGHCEKNQKLHISVLSGNGSTNPPSNDVLPEISPSYPTVFGGIPASPNGNASSSSRTRRFSIFVAVFVGLLVSITTPWHDLRTMV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46241835 46242527 - evm.model.ptg000003l.614 HCH6g1178 546672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1178 205 PANTHER BLUE COPPER PROTEIN 22 150 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH6g1178 205 Gene3D - 32 145 IPR008972 -
HCH6g1178 205 CDD OsENODL1_like 32 135 IPR041846 -
HCH6g1178 205 FunFam Early nodulin-like protein 1 31 139 - -
HCH6g1178 205 ProSiteProfiles Phytocyanin domain profile. 32 136 IPR003245 GO:0009055(InterPro)
HCH6g1178 205 SUPERFAMILY Cupredoxins 31 135 IPR008972 -
HCH6g1178 205 Pfam Plastocyanin-like domain 51 127 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1178 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1178 HCH-Chr6:46241835 HCH12g1062 HCH-Chr12:7980148 1.60E-19 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH2g0836 . 12 155 Phytocyanin Superfamily AT4G28365 52.8 2.8e-37 152.1
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH6g1178 . 17 174 Phytocyanin Superfamily AT1G64640 50.9 6.0e-37 151.0
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH4g0475 . 10 170 Phytocyanin Superfamily AT5G25090 53.8 1.4e-41 166.4
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH2g1317 . 35 219 Phytocyanin Superfamily AT1G08500 60.8 1.1e-61 233.4
HCH8g0501 . 27 153 Phytocyanin Superfamily AT2G27035 55.1 6.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014226 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 23