Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1181 ATGGGCAGGATGGGCGGTAGCCAGAGAACTTACAACGCTAATTCTACTGATTACAGGCTTCTCGAAGAGATTGGTTATGGGGCTAGTGCTACTGTTTTTAGAGCGATCTATATTCCGTACAATGAAGTTGTTGCTATCAAATGTTTGGATCTTGATCGCTGCAATAGCAATCTAGATGATATACGTCGGGAGGCCCAAACAATGAGTTTGATAGAGCATCCGAATATTGTAAGGGCTTTTTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACTCAGATGGCTTTGAAGAGGCTGCTATTGGTTCTATCTTGAAAGAAACTCTTAAAGCTCTGGAGTATCTCCATCGCCAAGGACACATACACCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGATTGTAAAGGTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAACGCTCCAGAAATACTTTTGTTGGGACACCGTGCTGGATGGCACCAGAGGTATTGCAACCAGGAACTGGGTATAATTCCAAGGCTGATATTTGGTCCTTTGGTATAACAGCATTGGAGTTGGCCCATGGTCATGCACCATTTTCAAAATATCCTCCGATGAAGGTGCTTCTTATGACCATACAAAATGCCCCTCCTGGACTAGATTATGATAGAGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCTTGGTGAAAGATCAAACCAAGAGGCCCACAGCTGAGAAACTTTTAAAGCACTCATTTTTCAAGAACGCCAAGCCGCCAGAGGTTTCTTTGAAGAAATTATTTTCAAACTTATCTCCCCTTTGGAATCGTGTAAAGGAACTTCAGGTTAAAGATGCTGCCCAACTTGCTTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAATTTTGATGTTGAGGATTTAAAAGCCCAAGCTTCCCTGGTAAATGATGATTTGCCAGAGATGAAAGAAGATGAGGAGAATATAAATTCATCTTATACTGTAAAGGATGCAATTTATCCCCGATCTATTTTGATGAATTTGAATCGAAGTAATGGATTATCTCAAGATGAGCATGGAGTAGGGACAAGTGGTCAGGGATTGCCGCAAGTTGAGTGCTTGAACGAAAAGGGAAATTGTATGGAAAATGATATGCTGAAATCTGGCATCCAAGAAAAAATTGGATCGAAGAGAAATGAAACTAGCTCTGAAGCAGAAGCATCTACCTCTGGCCAAGACGTTATACAGGCAAAGAATAAAACTCAAATGCCAAAAGGTCGTCAGACACAAAGTGGTCCACTTCTACCCGGTATGGTGCTTAGTCATTCATTATCAGAAAGAGTGCGAAGCTCTGAAAGGTTTGACTATGAAATTCAACCACCATCTGCTGAAAAAAACCGTCGCGAACGGCTAGCTCCAAGCTTCAGTGGTCCATTAATGCTGCCAAACCGAGCCTCAGCAAACAGTTTATCAGCTCCCATAAAACCTTCTGGAGGATTTAGAGATTCAATTGATGACAAATCAAAAGCTAATCTTGTGCAAATTAAAGGACGTTTTTCAGTAACATCAGAGAACTTAGATCTTGTGAAGGATATTCCATTAAGTACAGTCTCACGCAGATCTTCACAGATTTCACCTCTAAGAAAGTCAGCTAGTGTTGGAGATTGGATATTTGATCCCAAGCAGCCTGTCAGCCAATCCCCCAAGGAAGTTTGCAACACTAGCGCGTCCACATCAATTATAATGCCTCATCTTCAGAATCTTTTCCAGCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAGTAGCTTACAAACAGCAGACGTGGTAGATGCTACCCAAAATGGAAAGTTGCCTCCATTGCCTCGCAGCTCAGAGAACAATGGAAGTGTTGAGATGACAGCTGTTGAGAGAGAGCGTTTGTTGCTCCGGAAGGTCTCAGAACTTCAAGCTAGAATGACGCATTTAACATATGAATTGACTGCTGAAAAGTTGAAATACATTCAATTACAGGAGCAGTTAAACACGATATGTGATCAGGAAGAAAACGAGATCAAGAGGGAGAAGAATATCTGA 2196 41.48 MGRMGGSQRTYNANSTDYRLLEEIGYGASATVFRAIYIPYNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIEHPNIVRAFCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEAAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGIVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPEVSLKKLFSNLSPLWNRVKELQVKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDLPEMKEDEENINSSYTVKDAIYPRSILMNLNRSNGLSQDEHGVGTSGQGLPQVECLNEKGNCMENDMLKSGIQEKIGSKRNETSSEAEASTSGQDVIQAKNKTQMPKGRQTQSGPLLPGMVLSHSLSERVRSSERFDYEIQPPSAEKNRRERLAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSIDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQISPLRKSASVGDWIFDPKQPVSQSPKEVCNTSASTSIIMPHLQNLFQQTSIQQDLIVNLLSSLQTADVVDATQNGKLPPLPRSSENNGSVEMTAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQLNTICDQEENEIKREKNI 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46251093 46262299 - evm.model.ptg000003l.611 HCH6g1181 546675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1181 731 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
HCH6g1181 731 MobiDBLite consensus disorder prediction 439 453 - -
HCH6g1181 731 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 710 IPR047173 GO:0043539(InterPro)
HCH6g1181 731 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 MobiDBLite consensus disorder prediction 432 453 - -
HCH6g1181 731 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 Coils Coil 711 731 - -
HCH6g1181 731 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
HCH6g1181 731 Coils Coil 343 363 - -
HCH6g1181 731 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
HCH6g1181 731 CDD STKc_OSR1_SPAK 17 279 - -
HCH6g1181 731 MobiDBLite consensus disorder prediction 515 540 - -
HCH6g1181 731 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
HCH6g1181 731 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
HCH6g1181 731 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0822 HCH-Chr13:8095930 HCH6g1181 HCH-Chr6:46251093 7.00E-149 dispersed
HCH6g1181 HCH-Chr6:46251093 HCH9g0143 HCH-Chr9:820812 2.90E-124 dispersed
HCH11g1235 HCH-Chr11:44550570 HCH6g1181 HCH-Chr6:46251093 6.70E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81588 PF00069 Pkinase 1.50E-60 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1181 - - - 0.0