Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1181 ATGGGCAGGATGGGCGGTAGCCAGAGAACTTACAACGCTAATTCTACTGATTACAGGCTTCTCGAAGAGATTGGTTATGGGGCTAGTGCTACTGTTTTTAGAGCGATCTATATTCCGTACAATGAAGTTGTTGCTATCAAATGTTTGGATCTTGATCGCTGCAATAGCAATCTAGATGATATACGTCGGGAGGCCCAAACAATGAGTTTGATAGAGCATCCGAATATTGTAAGGGCTTTTTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACTCAGATGGCTTTGAAGAGGCTGCTATTGGTTCTATCTTGAAAGAAACTCTTAAAGCTCTGGAGTATCTCCATCGCCAAGGACACATACACCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGATTGTAAAGGTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAACGCTCCAGAAATACTTTTGTTGGGACACCGTGCTGGATGGCACCAGAGGTATTGCAACCAGGAACTGGGTATAATTCCAAGGCTGATATTTGGTCCTTTGGTATAACAGCATTGGAGTTGGCCCATGGTCATGCACCATTTTCAAAATATCCTCCGATGAAGGTGCTTCTTATGACCATACAAAATGCCCCTCCTGGACTAGATTATGATAGAGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCTTGGTGAAAGATCAAACCAAGAGGCCCACAGCTGAGAAACTTTTAAAGCACTCATTTTTCAAGAACGCCAAGCCGCCAGAGGTTTCTTTGAAGAAATTATTTTCAAACTTATCTCCCCTTTGGAATCGTGTAAAGGAACTTCAGGTTAAAGATGCTGCCCAACTTGCTTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAATTTTGATGTTGAGGATTTAAAAGCCCAAGCTTCCCTGGTAAATGATGATTTGCCAGAGATGAAAGAAGATGAGGAGAATATAAATTCATCTTATACTGTAAAGGATGCAATTTATCCCCGATCTATTTTGATGAATTTGAATCGAAGTAATGGATTATCTCAAGATGAGCATGGAGTAGGGACAAGTGGTCAGGGATTGCCGCAAGTTGAGTGCTTGAACGAAAAGGGAAATTGTATGGAAAATGATATGCTGAAATCTGGCATCCAAGAAAAAATTGGATCGAAGAGAAATGAAACTAGCTCTGAAGCAGAAGCATCTACCTCTGGCCAAGACGTTATACAGGCAAAGAATAAAACTCAAATGCCAAAAGGTCGTCAGACACAAAGTGGTCCACTTCTACCCGGTATGGTGCTTAGTCATTCATTATCAGAAAGAGTGCGAAGCTCTGAAAGGTTTGACTATGAAATTCAACCACCATCTGCTGAAAAAAACCGTCGCGAACGGCTAGCTCCAAGCTTCAGTGGTCCATTAATGCTGCCAAACCGAGCCTCAGCAAACAGTTTATCAGCTCCCATAAAACCTTCTGGAGGATTTAGAGATTCAATTGATGACAAATCAAAAGCTAATCTTGTGCAAATTAAAGGACGTTTTTCAGTAACATCAGAGAACTTAGATCTTGTGAAGGATATTCCATTAAGTACAGTCTCACGCAGATCTTCACAGATTTCACCTCTAAGAAAGTCAGCTAGTGTTGGAGATTGGATATTTGATCCCAAGCAGCCTGTCAGCCAATCCCCCAAGGAAGTTTGCAACACTAGCGCGTCCACATCAATTATAATGCCTCATCTTCAGAATCTTTTCCAGCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAGTAGCTTACAAACAGCAGACGTGGTAGATGCTACCCAAAATGGAAAGTTGCCTCCATTGCCTCGCAGCTCAGAGAACAATGGAAGTGTTGAGATGACAGCTGTTGAGAGAGAGCGTTTGTTGCTCCGGAAGGTCTCAGAACTTCAAGCTAGAATGACGCATTTAACATATGAATTGACTGCTGAAAAGTTGAAATACATTCAATTACAGGAGCAGTTAAACACGATATGTGATCAGGAAGAAAACGAGATCAAGAGGGAGAAGAATATCTGA 2196 41.48 MGRMGGSQRTYNANSTDYRLLEEIGYGASATVFRAIYIPYNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIEHPNIVRAFCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEAAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGIVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPEVSLKKLFSNLSPLWNRVKELQVKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDLPEMKEDEENINSSYTVKDAIYPRSILMNLNRSNGLSQDEHGVGTSGQGLPQVECLNEKGNCMENDMLKSGIQEKIGSKRNETSSEAEASTSGQDVIQAKNKTQMPKGRQTQSGPLLPGMVLSHSLSERVRSSERFDYEIQPPSAEKNRRERLAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSIDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQISPLRKSASVGDWIFDPKQPVSQSPKEVCNTSASTSIIMPHLQNLFQQTSIQQDLIVNLLSSLQTADVVDATQNGKLPPLPRSSENNGSVEMTAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQLNTICDQEENEIKREKNI 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46251093 46262299 - evm.model.ptg000003l.611 HCH6g1181 546675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1181 731 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
HCH6g1181 731 MobiDBLite consensus disorder prediction 439 453 - -
HCH6g1181 731 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 710 IPR047173 GO:0043539(InterPro)
HCH6g1181 731 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 MobiDBLite consensus disorder prediction 432 453 - -
HCH6g1181 731 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1181 731 Coils Coil 711 731 - -
HCH6g1181 731 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
HCH6g1181 731 Coils Coil 343 363 - -
HCH6g1181 731 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
HCH6g1181 731 CDD STKc_OSR1_SPAK 17 279 - -
HCH6g1181 731 MobiDBLite consensus disorder prediction 515 540 - -
HCH6g1181 731 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
HCH6g1181 731 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
HCH6g1181 731 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1181 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0822 HCH-Chr13:8095930 HCH6g1181 HCH-Chr6:46251093 7.00E-149 dispersed
HCH6g1181 HCH-Chr6:46251093 HCH9g0143 HCH-Chr9:820812 2.90E-124 dispersed
HCH11g1235 HCH-Chr11:44550570 HCH6g1181 HCH-Chr6:46251093 6.70E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81588 PF00069 Pkinase 1.50E-60 CL0016 HCH PK