Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g1222 | ATGGGGGACGATGACATCTCAGAGCTGCTTACTACATCCACCAATATTACAGAGATGGCAAATATTTCACACCCCTCATTTTCTCCCTCCTCATTCCATTGCACAAACCTTCCTCTCAAGGAAATCACCCAAGAATCGGTTTCTTCTAATTCCGACATCGATTGGATCACCTTTTTTTCGGGCTCCGATATCAACTTAGAGACGATATTAAAGAAACCAGAAATTGAGACCGATCAGGTTGCAATGGCTACCAATGATCATGATGGATTAAGAGAATCAAGTTATGAAGGGAAAAATAGTAAAGGGAAAATGGTCGGTAAAACAATGAAAAAACCTTCACTTCCGAGGATTGCTTTCCATACTAGGAGTGCTGAGGATGTTCTTGATGATGGTTACCGATGGAGAAAATATGGGCAGAAATCAGTAAAACACACCACCCATCCAAGGAGCTATTATCGGTGCACACATCATACATGCAACGTAAAGAAACAAATTCAAAGGCACTCCAAGGATTCAAGAATAGTGGTGACAACATATGAAGGGATTCACAACCATCCTTGTGAAAAATTAATGGAGACCTTAACCCCAATACTTAAGCAATTGCAATTTCTTTCTACCATTTAG | 624 | 40.06 | MGDDDISELLTTSTNITEMANISHPSFSPSSFHCTNLPLKEITQESVSSNSDIDWITFFSGSDINLETILKKPEIETDQVAMATNDHDGLRESSYEGKNSKGKMVGKTMKKPSLPRIAFHTRSAEDVLDDGYRWRKYGQKSVKHTTHPRSYYRCTHHTCNVKKQIQRHSKDSRIVVTTYEGIHNHPCEKLMETLTPILKQLQFLSTI | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 46631162 | 46632651 | + | evm.model.ptg000003l.570 | HCH6g1222 | 546716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g1222 | 207 | SUPERFAMILY | WRKY DNA-binding domain | 121 | 187 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1222 | 207 | ProSiteProfiles | WRKY domain profile. | 123 | 188 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1222 | 207 | FunFam | WRKY transcription factor 57 | 114 | 188 | - | - | |
HCH6g1222 | 207 | Pfam | WRKY DNA -binding domain | 129 | 186 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1222 | 207 | Gene3D | WRKY domain | 115 | 181 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1222 | 207 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 80 | 186 | IPR044810 | GO:0003700(InterPro) | |
HCH6g1222 | 207 | SMART | WRKY_cls | 128 | 187 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g1222 | HCH-Chr6:46631162 | HCH9g0052 | HCH-Chr9:321993 | 5.90E-30 | dispersed | |
HCH6g1221 | HCH-Chr6:46628616 | HCH6g1222 | HCH-Chr6:46631162 | 1.90E-14 | tandem | |
HCH6g1222 | HCH-Chr6:46631162 | HCH7g1659 | HCH-Chr7:48648061 | 9.40E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33759 | PF03106 | WRKY | 1.20E-23 | CL0274 | HCH | TF |
Pathway information
