Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1222 ATGGGGGACGATGACATCTCAGAGCTGCTTACTACATCCACCAATATTACAGAGATGGCAAATATTTCACACCCCTCATTTTCTCCCTCCTCATTCCATTGCACAAACCTTCCTCTCAAGGAAATCACCCAAGAATCGGTTTCTTCTAATTCCGACATCGATTGGATCACCTTTTTTTCGGGCTCCGATATCAACTTAGAGACGATATTAAAGAAACCAGAAATTGAGACCGATCAGGTTGCAATGGCTACCAATGATCATGATGGATTAAGAGAATCAAGTTATGAAGGGAAAAATAGTAAAGGGAAAATGGTCGGTAAAACAATGAAAAAACCTTCACTTCCGAGGATTGCTTTCCATACTAGGAGTGCTGAGGATGTTCTTGATGATGGTTACCGATGGAGAAAATATGGGCAGAAATCAGTAAAACACACCACCCATCCAAGGAGCTATTATCGGTGCACACATCATACATGCAACGTAAAGAAACAAATTCAAAGGCACTCCAAGGATTCAAGAATAGTGGTGACAACATATGAAGGGATTCACAACCATCCTTGTGAAAAATTAATGGAGACCTTAACCCCAATACTTAAGCAATTGCAATTTCTTTCTACCATTTAG 624 40.06 MGDDDISELLTTSTNITEMANISHPSFSPSSFHCTNLPLKEITQESVSSNSDIDWITFFSGSDINLETILKKPEIETDQVAMATNDHDGLRESSYEGKNSKGKMVGKTMKKPSLPRIAFHTRSAEDVLDDGYRWRKYGQKSVKHTTHPRSYYRCTHHTCNVKKQIQRHSKDSRIVVTTYEGIHNHPCEKLMETLTPILKQLQFLSTI 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46631162 46632651 + evm.model.ptg000003l.570 HCH6g1222 546716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1222 207 SUPERFAMILY WRKY DNA-binding domain 121 187 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1222 207 ProSiteProfiles WRKY domain profile. 123 188 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1222 207 FunFam WRKY transcription factor 57 114 188 - -
HCH6g1222 207 Pfam WRKY DNA -binding domain 129 186 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1222 207 Gene3D WRKY domain 115 181 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1222 207 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 186 IPR044810 GO:0003700(InterPro)
HCH6g1222 207 SMART WRKY_cls 128 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1222 HCH-Chr6:46631162 HCH9g0052 HCH-Chr9:321993 5.90E-30 dispersed
HCH6g1221 HCH-Chr6:46628616 HCH6g1222 HCH-Chr6:46631162 1.90E-14 tandem
HCH6g1222 HCH-Chr6:46631162 HCH7g1659 HCH-Chr7:48648061 9.40E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33759 PF03106 WRKY 1.20E-23 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1222 - - - 0.0