Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1234 ATGGCTTCAAATGCTACTACAGCAGTGACCAAATGCCCATCTCCAATGAAAGCAACATCGAACGGAATTTTCCAGGGCGACCATCCTCTCGATTTCGCGCTTCCTCTTATCATTCTCCAAATATGTTTGGTAGTTGTACTTACTCGTGGTCTTGCTTTTGTTTTGAGGCCGTTAAAACAGCCACGAGTGGTTGCAGAAATTATCGGAGGAATACTTCTCGGTCCATCGGCTTTTGGACGTAACAAAAGCTATCTTCATACTGTATTTCCACCAAATAGTATCACATTATTAGATACTATAGCAAACATTGGATTGCTATTCTTTCTCTTTCTTGTGGGCCTTGAGTTAGATTTAGAGTCACTTCGTCGTACTGGAAAGAAAGCCCTTGGCATTGCCATTACTGGAATCTCCCTTCCCTTTGTGTTAGGAATTGGATCATCATTTATCCTTCGAGAAACCATATCTAAAGGAGTAAATGGCTCTGCATTTCTCATATTCATGGGTGTTGCACTTTCAATAACAGCATTTCCCGTCTTGGCTCGTATTCTTGCTGAGCTTAGACTTTTAACCACTGAAATCGGCAGGATGGCTATGTCTGCCGCTGCAGTGAATGATGTAGCTGCCTGGATTCTCCTTGCTCTTGCCGTTGCATTATCTGGCTCTGATAAATCTCCCCTAACTGCTATTTGGGTCCTTTTATCTGGCTTCGGATTTGTCATTCTTGCTTTCCTCATTTTATCTCCAGTTTTCAAATGGATGACCAAGCAATGTTTGGAAGGGGAGCCAGTAAGTGAGATTTACATATGCGCCACACTAGCTATTGTTTTAGCTGCTGGATTTTCTACAGATGTTATTGGAATTCATGCGATGTTTGGGGCTTTTGTTGTCGGAGTATTTGTTCCCAAGGATGGGCCGCTTGTAGGAGCTTTGGTGGAAAAGATAGAGGATCTTGTTTCTGGCCTCTTCCTGCCTCTTTACTTTGTGTCAAGTGGATTAAAGACTAATATAGCCACAATTCAAGGAGGACAGTCCTGGGCTCTTCTTGCTTTAGTCATAGCTACTGCCTGTTTTGGAAAGATAGTTGGTACATTCCTCGTGTCCATTCTTTGTAAAATACCCGTTCGTGAGGCTCTCACACTAGGATTTCTAATGAACACTAAAGGTTTGGTAGAGCTTATTGTTCTCAATATTGGGAAAGACAGAAAGGTTTTGAATGATCAGACCTTTGCAATTATGGTTCTAATGGCTCTTTTTACCACGTTCATTACTACTCCAGCTGTCATTGCCTTATACAAACCAGCGAGGAGGGCTAAAATAGCTGATTATAAGCATAGGCAAATTGAAAGGAAAAACAAGAGTAACCAGCTTAGGATTTTGACCTGTTTCCATAGTGCAAGAAACATCCCATCAATAATAAATCTCCTCGAGGCCTCGAGAGGAACTGAGAAGGGCGAAGAACTTTGTGTGTATGCAATGCACCTCATGGAGTTGTCTGAGAGACCATCAGCCATTTTAATGGTACATAAGGCAAGGAAAAATGGGATGCCTTTCTGGAATAAGGGCCAAAAATCAGATTCCAACCATGTCATTGTAGCATTTGAAGCCTACCAGCAACTGAGCAGAGTATTTATCAGGTCGATGACAGCTATCTCTTCAATGTCTGACATACATGAAGACATTTGCTCGACTGCCAAAAGGAAAAGAGCTGCAATTATAATTCTTCCATTCCACAAACACCAGAGGGTAGATGGTTCACTGGAGAATACACGAAACAGCATCCGCGTTGTTAACCAGAACGTTCTTGAGCACGCTCCTTGTTCAGTTGGAATTCTGGTTGATCGTGGGCTCGGTGGAACAACCCATGTATCTTCAAGCAACGTTTCATTTCTCATTACTGTTCTATTCTTTGGTGGTCAAGACGACCGAGAAGCCCTTTCTTATGGATCTCGCATGGCCGAGCACCCCGGCATTAAATTGATGGTAATTCGTTTCATCATAGAACCTGAGCCTGTTGGGGAGATTGTCAGTGCTAATACACACCGAAATTCATCCTCGAAACTAGCTCCCCAGGATGATGAGTTTCTTTCTGAATTCCAGCAGAATGTTGCCAAGGACGACTCTATCTCATATGAGCAGAAAGTCATAAAAGATGCTGCAGAAGTAATCACCACAGTGAAAGAGTTGAAACAGTGCAATCTGTATCTTGTTGGCCGAATGTCGGATGTCGACAGAACGGCCTTTTCCCTGAACAGAAGTGACTGTCCGGAGCTTGGTCCAGTTGGGAATTTGCTGATTTCACCAGAGTTCCCCGTTGCAGCATCAGTTTTGGTGGTGCAGCAATATCGCCATGGAGTAAGGCTAAATTTGACTTCAGACTCTGGTGATGGAGAATCAGAATCAACATAA 2406 42.98 MASNATTAVTKCPSPMKATSNGIFQGDHPLDFALPLIILQICLVVVLTRGLAFVLRPLKQPRVVAEIIGGILLGPSAFGRNKSYLHTVFPPNSITLLDTIANIGLLFFLFLVGLELDLESLRRTGKKALGIAITGISLPFVLGIGSSFILRETISKGVNGSAFLIFMGVALSITAFPVLARILAELRLLTTEIGRMAMSAAAVNDVAAWILLALAVALSGSDKSPLTAIWVLLSGFGFVILAFLILSPVFKWMTKQCLEGEPVSEIYICATLAIVLAAGFSTDVIGIHAMFGAFVVGVFVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNIATIQGGQSWALLALVIATACFGKIVGTFLVSILCKIPVREALTLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPAVIALYKPARRAKIADYKHRQIERKNKSNQLRILTCFHSARNIPSIINLLEASRGTEKGEELCVYAMHLMELSERPSAILMVHKARKNGMPFWNKGQKSDSNHVIVAFEAYQQLSRVFIRSMTAISSMSDIHEDICSTAKRKRAAIIILPFHKHQRVDGSLENTRNSIRVVNQNVLEHAPCSVGILVDRGLGGTTHVSSSNVSFLITVLFFGGQDDREALSYGSRMAEHPGIKLMVIRFIIEPEPVGEIVSANTHRNSSSKLAPQDDEFLSEFQQNVAKDDSISYEQKVIKDAAEVITTVKELKQCNLYLVGRMSDVDRTAFSLNRSDCPELGPVGNLLISPEFPVAASVLVVQQYRHGVRLNLTSDSGDGESEST 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46720635 46723679 - evm.model.ptg000003l.558 HCH6g1234 546728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1234 801 Pfam Sodium/hydrogen exchanger family 47 424 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH6g1234 801 PANTHER CATION/H + ANTIPORTER 12 782 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH6g1234 801 Gene3D - 36 441 IPR038770 -
HCH6g1234 801 FunFam Cation/H(+) antiporter 15 36 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1234 K26731 - - csv:101223205 1278.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1234 HCH-Chr6:46720635 HCH9g0653 HCH-Chr9:4341798 2.00E-195 dispersed
HCH6g1234 HCH-Chr6:46720635 HCH6g1235 HCH-Chr6:46736001 1.20E-296 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH4g1209 . 35 794 Antiporter Super Family AT3G52080 55.4 1.4e-241 832.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111