Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1234 ATGGCTTCAAATGCTACTACAGCAGTGACCAAATGCCCATCTCCAATGAAAGCAACATCGAACGGAATTTTCCAGGGCGACCATCCTCTCGATTTCGCGCTTCCTCTTATCATTCTCCAAATATGTTTGGTAGTTGTACTTACTCGTGGTCTTGCTTTTGTTTTGAGGCCGTTAAAACAGCCACGAGTGGTTGCAGAAATTATCGGAGGAATACTTCTCGGTCCATCGGCTTTTGGACGTAACAAAAGCTATCTTCATACTGTATTTCCACCAAATAGTATCACATTATTAGATACTATAGCAAACATTGGATTGCTATTCTTTCTCTTTCTTGTGGGCCTTGAGTTAGATTTAGAGTCACTTCGTCGTACTGGAAAGAAAGCCCTTGGCATTGCCATTACTGGAATCTCCCTTCCCTTTGTGTTAGGAATTGGATCATCATTTATCCTTCGAGAAACCATATCTAAAGGAGTAAATGGCTCTGCATTTCTCATATTCATGGGTGTTGCACTTTCAATAACAGCATTTCCCGTCTTGGCTCGTATTCTTGCTGAGCTTAGACTTTTAACCACTGAAATCGGCAGGATGGCTATGTCTGCCGCTGCAGTGAATGATGTAGCTGCCTGGATTCTCCTTGCTCTTGCCGTTGCATTATCTGGCTCTGATAAATCTCCCCTAACTGCTATTTGGGTCCTTTTATCTGGCTTCGGATTTGTCATTCTTGCTTTCCTCATTTTATCTCCAGTTTTCAAATGGATGACCAAGCAATGTTTGGAAGGGGAGCCAGTAAGTGAGATTTACATATGCGCCACACTAGCTATTGTTTTAGCTGCTGGATTTTCTACAGATGTTATTGGAATTCATGCGATGTTTGGGGCTTTTGTTGTCGGAGTATTTGTTCCCAAGGATGGGCCGCTTGTAGGAGCTTTGGTGGAAAAGATAGAGGATCTTGTTTCTGGCCTCTTCCTGCCTCTTTACTTTGTGTCAAGTGGATTAAAGACTAATATAGCCACAATTCAAGGAGGACAGTCCTGGGCTCTTCTTGCTTTAGTCATAGCTACTGCCTGTTTTGGAAAGATAGTTGGTACATTCCTCGTGTCCATTCTTTGTAAAATACCCGTTCGTGAGGCTCTCACACTAGGATTTCTAATGAACACTAAAGGTTTGGTAGAGCTTATTGTTCTCAATATTGGGAAAGACAGAAAGGTTTTGAATGATCAGACCTTTGCAATTATGGTTCTAATGGCTCTTTTTACCACGTTCATTACTACTCCAGCTGTCATTGCCTTATACAAACCAGCGAGGAGGGCTAAAATAGCTGATTATAAGCATAGGCAAATTGAAAGGAAAAACAAGAGTAACCAGCTTAGGATTTTGACCTGTTTCCATAGTGCAAGAAACATCCCATCAATAATAAATCTCCTCGAGGCCTCGAGAGGAACTGAGAAGGGCGAAGAACTTTGTGTGTATGCAATGCACCTCATGGAGTTGTCTGAGAGACCATCAGCCATTTTAATGGTACATAAGGCAAGGAAAAATGGGATGCCTTTCTGGAATAAGGGCCAAAAATCAGATTCCAACCATGTCATTGTAGCATTTGAAGCCTACCAGCAACTGAGCAGAGTATTTATCAGGTCGATGACAGCTATCTCTTCAATGTCTGACATACATGAAGACATTTGCTCGACTGCCAAAAGGAAAAGAGCTGCAATTATAATTCTTCCATTCCACAAACACCAGAGGGTAGATGGTTCACTGGAGAATACACGAAACAGCATCCGCGTTGTTAACCAGAACGTTCTTGAGCACGCTCCTTGTTCAGTTGGAATTCTGGTTGATCGTGGGCTCGGTGGAACAACCCATGTATCTTCAAGCAACGTTTCATTTCTCATTACTGTTCTATTCTTTGGTGGTCAAGACGACCGAGAAGCCCTTTCTTATGGATCTCGCATGGCCGAGCACCCCGGCATTAAATTGATGGTAATTCGTTTCATCATAGAACCTGAGCCTGTTGGGGAGATTGTCAGTGCTAATACACACCGAAATTCATCCTCGAAACTAGCTCCCCAGGATGATGAGTTTCTTTCTGAATTCCAGCAGAATGTTGCCAAGGACGACTCTATCTCATATGAGCAGAAAGTCATAAAAGATGCTGCAGAAGTAATCACCACAGTGAAAGAGTTGAAACAGTGCAATCTGTATCTTGTTGGCCGAATGTCGGATGTCGACAGAACGGCCTTTTCCCTGAACAGAAGTGACTGTCCGGAGCTTGGTCCAGTTGGGAATTTGCTGATTTCACCAGAGTTCCCCGTTGCAGCATCAGTTTTGGTGGTGCAGCAATATCGCCATGGAGTAAGGCTAAATTTGACTTCAGACTCTGGTGATGGAGAATCAGAATCAACATAA 2406 42.98 MASNATTAVTKCPSPMKATSNGIFQGDHPLDFALPLIILQICLVVVLTRGLAFVLRPLKQPRVVAEIIGGILLGPSAFGRNKSYLHTVFPPNSITLLDTIANIGLLFFLFLVGLELDLESLRRTGKKALGIAITGISLPFVLGIGSSFILRETISKGVNGSAFLIFMGVALSITAFPVLARILAELRLLTTEIGRMAMSAAAVNDVAAWILLALAVALSGSDKSPLTAIWVLLSGFGFVILAFLILSPVFKWMTKQCLEGEPVSEIYICATLAIVLAAGFSTDVIGIHAMFGAFVVGVFVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNIATIQGGQSWALLALVIATACFGKIVGTFLVSILCKIPVREALTLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPAVIALYKPARRAKIADYKHRQIERKNKSNQLRILTCFHSARNIPSIINLLEASRGTEKGEELCVYAMHLMELSERPSAILMVHKARKNGMPFWNKGQKSDSNHVIVAFEAYQQLSRVFIRSMTAISSMSDIHEDICSTAKRKRAAIIILPFHKHQRVDGSLENTRNSIRVVNQNVLEHAPCSVGILVDRGLGGTTHVSSSNVSFLITVLFFGGQDDREALSYGSRMAEHPGIKLMVIRFIIEPEPVGEIVSANTHRNSSSKLAPQDDEFLSEFQQNVAKDDSISYEQKVIKDAAEVITTVKELKQCNLYLVGRMSDVDRTAFSLNRSDCPELGPVGNLLISPEFPVAASVLVVQQYRHGVRLNLTSDSGDGESEST 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46720635 46723679 - evm.model.ptg000003l.558 HCH6g1234 546728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1234 801 Pfam Sodium/hydrogen exchanger family 47 424 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH6g1234 801 PANTHER CATION/H + ANTIPORTER 12 782 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH6g1234 801 Gene3D - 36 441 IPR038770 -
HCH6g1234 801 FunFam Cation/H(+) antiporter 15 36 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1234 HCH-Chr6:46720635 HCH9g0653 HCH-Chr9:4341798 2.00E-195 dispersed
HCH6g1234 HCH-Chr6:46720635 HCH6g1235 HCH-Chr6:46736001 1.20E-296 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1234 K26731 - csv:101223205 1278.85