Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1235 ATGGCGACAAATGCGACGGCCGTGGGTGCATGCCCGAAGCCGATGAAAGCAACGTCGAACGGCGTGTTTCAAGGTGACAATCCACTTGATTACGCTCTCCCTCTCGCCATCTTGCAGATATGTCTCGTCGTCGTTCTCACCAGGGTTCTTGCTTTCCTTCTCCGACCTATCCGACAACCTCGTGTCATTGCCGAGATTATCGGAGGAATATTACTGGGGCCATCAGCACTTGGTCGTAACCTGGATTATCTACATGCAATTTTCCCACCAAAAAGTCTGACTGTTTTAGATACATTGGCCAATCTTGGTCTCCTCTTTTTCTTATTTCTCGTGGGGCTTGAGTTAGATTTCAAATCTCTCCGTCGAACGGGGAAGAGAGCGATAAGTATAGCCGTCGTCGGGATCAGCCTGCCTTTCGTTCTCGGCGTCGGTACCTCTTTCGTTCTGCGATCAACCATCTCCAAAGGCGTCAATGGACCAGCCTTCATTGTCTTCATGGGTGTGGCTGTTTCCATCACAGCTTTTCCTGTCTTGGCTCGTATCTTGGCCGAGCTCAAGCTCTTAACGACCGATGTCGGACGGATGGCGATGTCGGCCGCCGCCGTAAATGATGTAGCAGCATGGATTCTTCTTGCTCTAGCCATCGCGCTTTCGGGCACCGGAAACTCTCCTTTCGTAGCCCTTTGGGTGTTGTTGTGCGGCGTGGGTTTTGTTGCTCTTTGCTTTTTTCTCCTCCCTCCCGTCTTCAAATGGATGTCGGTCCGTTGTTCGGAGGGAGAGCCGGTGAAGGAGTTGTACATTTGTGCAACTTTGACAGCGGTTTTAGCAGCCGGGTTTGTGACAGATTTGATAGGAATTCATGCTCTTTTTGGGGCATTCGTGATTGGAATTCTTGTTCCTAAAGAAGGAGCATTTGCAGGAGCTCTTGTGGAGAAGGTAGAGGATCTTGTATCAGGTCTTTTCCTTCCTCTATACTTCGTTTCAAGTGGATTGAAGACGAATGTAGCAACAATAGAAGGAGGCCTGTCATGGGGTCTTCTTGTTTTGGTCATTTTCACTGCTTGTTTTGGTAAAATTGTTGGAACTTTATCGGTTTCATTGCTTTGCAAGATGCCTATGGACGAGTCACTTGCTCTTGGATTCTTGATGAACACTAAAGGATTGGTTGAACTCATTGTTCTCAATATTGGAAAAGATAGGAAGGTACTGAATGATCAAACATTTGCCATCATGGTTCTAATGGCCATCTTCACAACCTTTATCACAACACCGGTTGTGATGGCAGTATACAAACCAGCTAAACGAAAGAGCAAATCCAATTACAGTCAGAGAACTATTGAAAGAGAAGATCCAAATTCTCAACTTCGCATTTTGGCCTGTTTTCATTCAATCAACAACATCCCAGCAACTATTAATCTCATTGAAGCTTCTCGTGGGATTGAAAAGAAAGAAGGCCTATGTGTCTACGCCATGCACCTAATGGAACTCTCTGAGAGATCATCAGCCATTCTCATGGTCCACAAAGCTAAAAAGAACGGCTTACCCTTTTGGAACAAAGGACGGGCGGATTCCAACCAAATCGTCGTCGCTTTCGAAGCTTTTCGACAACTTAGTCGGGTGTCTATCCGTCCAATGACGGCTATCTCTCCTCTATCCAACATGCATGAAGATGTCTACAACACTGCCGAAAGGAAAAGAGCTGCTTTTATAATCCTCCCTTTCCACAAACATCAGCGGCTAGATGGAACTTTGGAAACTACACGAGCTGATTTTCGATGGGTTAATAAGAAAGTTCTGGACAATGCACCTTGCTCGGTCGGGATCTTAGTCGACCGAGGTCTCGGCGGTGGATCCCATGTCACCTCAAGCAATGTCTCTTCCACTAAAACCGTCTTCTTTTTCGGCGGTCGCGACGACCGTGAAGCTCTTGCACTCGGCCTAAGAATGGCCGAGCATCCCGGCATCAGCCTCAACGTCATTCGCTTCATCCCGAGCACGAATATCACAGTGGATTCGGTCGCGGTCAACATCATCAACAACAACAATATAGCCTCCAATTCCGCATCGGATGAGAAGGTGTTGGCTGAGTTCCAAAAGAGGGTGGTAGAGAATGACTCAATCAAATATGAAGAGATTTTGGTGAATAAAGGCAATGAAGTCATTGAAGCAATGAAGGAATACAGTAGATGCAATTTGATGTTGGTAGGGCAAATGCCGGAGGGACAATGTGTAGCTAGTCTCAATGGGAAGGATATCGAATGTCCGGAGCTCGGTCCGGTCGGTGGCTTCTTGACATCGCCGGAGTTCTCGACCTCGGCTTCGGTGTTGGTGGTGCAACAGTTTCATGGACAACTAGCTGCTTCAACGTCTAGAACAGTGGTGTTGCCTGAGAAAGATTAG 2400 47.21 MATNATAVGACPKPMKATSNGVFQGDNPLDYALPLAILQICLVVVLTRVLAFLLRPIRQPRVIAEIIGGILLGPSALGRNLDYLHAIFPPKSLTVLDTLANLGLLFFLFLVGLELDFKSLRRTGKRAISIAVVGISLPFVLGVGTSFVLRSTISKGVNGPAFIVFMGVAVSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPFVALWVLLCGVGFVALCFFLLPPVFKWMSVRCSEGEPVKELYICATLTAVLAAGFVTDLIGIHALFGAFVIGILVPKEGAFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIEGGLSWGLLVLVIFTACFGKIVGTLSVSLLCKMPMDESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPVVMAVYKPAKRKSKSNYSQRTIEREDPNSQLRILACFHSINNIPATINLIEASRGIEKKEGLCVYAMHLMELSERSSAILMVHKAKKNGLPFWNKGRADSNQIVVAFEAFRQLSRVSIRPMTAISPLSNMHEDVYNTAERKRAAFIILPFHKHQRLDGTLETTRADFRWVNKKVLDNAPCSVGILVDRGLGGGSHVTSSNVSSTKTVFFFGGRDDREALALGLRMAEHPGISLNVIRFIPSTNITVDSVAVNIINNNNIASNSASDEKVLAEFQKRVVENDSIKYEEILVNKGNEVIEAMKEYSRCNLMLVGQMPEGQCVASLNGKDIECPELGPVGGFLTSPEFSTSASVLVVQQFHGQLAASTSRTVVLPEKD 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46736001 46744475 - evm.model.ptg000003l.557 HCH6g1235 546729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1235 799 Gene3D - 35 440 IPR038770 -
HCH6g1235 799 PANTHER CATION/H + ANTIPORTER 11 785 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH6g1235 799 FunFam Cation/H(+) antiporter 15 35 437 - -
HCH6g1235 799 Pfam Sodium/hydrogen exchanger family 48 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1235 K26731 - - csv:101202937 1160.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0250 HCH-Chr2:38301674 HCH6g1235 HCH-Chr6:46736001 2.30E-205 dispersed
HCH4g1209 HCH-Chr4:8107414 HCH6g1235 HCH-Chr6:46736001 2.00E-86 dispersed
HCH5g0312 HCH-Chr5:1958812 HCH6g1235 HCH-Chr6:46736001 7.10E-84 dispersed
HCH6g0318 HCH-Chr6:4913428 HCH6g1235 HCH-Chr6:46736001 3.90E-136 dispersed
HCH6g0319 HCH-Chr6:4939420 HCH6g1235 HCH-Chr6:46736001 2.80E-142 dispersed
HCH6g1235 HCH-Chr6:46736001 HCH9g0653 HCH-Chr9:4341798 4.20E-201 dispersed
HCH6g1234 HCH-Chr6:46720635 HCH6g1235 HCH-Chr6:46736001 1.20E-296 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH2g0250 . 13 797 Antiporter Super Family AT2G13620 72.8 0.0e+00 1131.7
HCH6g1235 . 11 784 Antiporter Super Family AT1G64170 59.6 3.4e-246 848.2
HCH6g1234 . 4 781 Antiporter Super Family AT1G64170 55.3 2.1e-224 775.8
HCH6g1235 . 1 797 Antiporter Super Family AT4G23700 65.7 2.0e-294 1008.4
HCH6g1234 . 10 798 Antiporter Super Family AT4G23700 59.5 6.4e-261 897.1
HCH6g1235 . 1 799 Antiporter Super Family AT5G41610 67.8 3.8e-306 1047.3
HCH6g1234 . 1 799 Antiporter Super Family AT5G41610 66.1 4.8e-293 1003.8
HCH9g0653 . 8 826 Antiporter Super Family AT5G41610 50.2 1.7e-205 713.0
HCH6g1235 . 2 781 Antiporter Super Family AT3G17630 64.9 4.4e-275 944.1
HCH6g1234 . 5 781 Antiporter Super Family AT3G17630 61.8 1.6e-264 909.1
HCH9g0653 . 8 812 Antiporter Super Family AT3G17630 50.7 3.0e-199 692.2
HCH9g0653 . 76 833 Antiporter Super Family AT3G53720 67.1 1.6e-277 952.2
HCH6g1235 . 83 780 Antiporter Super Family AT3G53720 50.1 3.2e-182 635.6
HCH4g1209 . 35 794 Antiporter Super Family AT3G52080 55.4 1.4e-241 832.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111