Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1235 ATGGCGACAAATGCGACGGCCGTGGGTGCATGCCCGAAGCCGATGAAAGCAACGTCGAACGGCGTGTTTCAAGGTGACAATCCACTTGATTACGCTCTCCCTCTCGCCATCTTGCAGATATGTCTCGTCGTCGTTCTCACCAGGGTTCTTGCTTTCCTTCTCCGACCTATCCGACAACCTCGTGTCATTGCCGAGATTATCGGAGGAATATTACTGGGGCCATCAGCACTTGGTCGTAACCTGGATTATCTACATGCAATTTTCCCACCAAAAAGTCTGACTGTTTTAGATACATTGGCCAATCTTGGTCTCCTCTTTTTCTTATTTCTCGTGGGGCTTGAGTTAGATTTCAAATCTCTCCGTCGAACGGGGAAGAGAGCGATAAGTATAGCCGTCGTCGGGATCAGCCTGCCTTTCGTTCTCGGCGTCGGTACCTCTTTCGTTCTGCGATCAACCATCTCCAAAGGCGTCAATGGACCAGCCTTCATTGTCTTCATGGGTGTGGCTGTTTCCATCACAGCTTTTCCTGTCTTGGCTCGTATCTTGGCCGAGCTCAAGCTCTTAACGACCGATGTCGGACGGATGGCGATGTCGGCCGCCGCCGTAAATGATGTAGCAGCATGGATTCTTCTTGCTCTAGCCATCGCGCTTTCGGGCACCGGAAACTCTCCTTTCGTAGCCCTTTGGGTGTTGTTGTGCGGCGTGGGTTTTGTTGCTCTTTGCTTTTTTCTCCTCCCTCCCGTCTTCAAATGGATGTCGGTCCGTTGTTCGGAGGGAGAGCCGGTGAAGGAGTTGTACATTTGTGCAACTTTGACAGCGGTTTTAGCAGCCGGGTTTGTGACAGATTTGATAGGAATTCATGCTCTTTTTGGGGCATTCGTGATTGGAATTCTTGTTCCTAAAGAAGGAGCATTTGCAGGAGCTCTTGTGGAGAAGGTAGAGGATCTTGTATCAGGTCTTTTCCTTCCTCTATACTTCGTTTCAAGTGGATTGAAGACGAATGTAGCAACAATAGAAGGAGGCCTGTCATGGGGTCTTCTTGTTTTGGTCATTTTCACTGCTTGTTTTGGTAAAATTGTTGGAACTTTATCGGTTTCATTGCTTTGCAAGATGCCTATGGACGAGTCACTTGCTCTTGGATTCTTGATGAACACTAAAGGATTGGTTGAACTCATTGTTCTCAATATTGGAAAAGATAGGAAGGTACTGAATGATCAAACATTTGCCATCATGGTTCTAATGGCCATCTTCACAACCTTTATCACAACACCGGTTGTGATGGCAGTATACAAACCAGCTAAACGAAAGAGCAAATCCAATTACAGTCAGAGAACTATTGAAAGAGAAGATCCAAATTCTCAACTTCGCATTTTGGCCTGTTTTCATTCAATCAACAACATCCCAGCAACTATTAATCTCATTGAAGCTTCTCGTGGGATTGAAAAGAAAGAAGGCCTATGTGTCTACGCCATGCACCTAATGGAACTCTCTGAGAGATCATCAGCCATTCTCATGGTCCACAAAGCTAAAAAGAACGGCTTACCCTTTTGGAACAAAGGACGGGCGGATTCCAACCAAATCGTCGTCGCTTTCGAAGCTTTTCGACAACTTAGTCGGGTGTCTATCCGTCCAATGACGGCTATCTCTCCTCTATCCAACATGCATGAAGATGTCTACAACACTGCCGAAAGGAAAAGAGCTGCTTTTATAATCCTCCCTTTCCACAAACATCAGCGGCTAGATGGAACTTTGGAAACTACACGAGCTGATTTTCGATGGGTTAATAAGAAAGTTCTGGACAATGCACCTTGCTCGGTCGGGATCTTAGTCGACCGAGGTCTCGGCGGTGGATCCCATGTCACCTCAAGCAATGTCTCTTCCACTAAAACCGTCTTCTTTTTCGGCGGTCGCGACGACCGTGAAGCTCTTGCACTCGGCCTAAGAATGGCCGAGCATCCCGGCATCAGCCTCAACGTCATTCGCTTCATCCCGAGCACGAATATCACAGTGGATTCGGTCGCGGTCAACATCATCAACAACAACAATATAGCCTCCAATTCCGCATCGGATGAGAAGGTGTTGGCTGAGTTCCAAAAGAGGGTGGTAGAGAATGACTCAATCAAATATGAAGAGATTTTGGTGAATAAAGGCAATGAAGTCATTGAAGCAATGAAGGAATACAGTAGATGCAATTTGATGTTGGTAGGGCAAATGCCGGAGGGACAATGTGTAGCTAGTCTCAATGGGAAGGATATCGAATGTCCGGAGCTCGGTCCGGTCGGTGGCTTCTTGACATCGCCGGAGTTCTCGACCTCGGCTTCGGTGTTGGTGGTGCAACAGTTTCATGGACAACTAGCTGCTTCAACGTCTAGAACAGTGGTGTTGCCTGAGAAAGATTAG 2400 47.21 MATNATAVGACPKPMKATSNGVFQGDNPLDYALPLAILQICLVVVLTRVLAFLLRPIRQPRVIAEIIGGILLGPSALGRNLDYLHAIFPPKSLTVLDTLANLGLLFFLFLVGLELDFKSLRRTGKRAISIAVVGISLPFVLGVGTSFVLRSTISKGVNGPAFIVFMGVAVSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPFVALWVLLCGVGFVALCFFLLPPVFKWMSVRCSEGEPVKELYICATLTAVLAAGFVTDLIGIHALFGAFVIGILVPKEGAFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIEGGLSWGLLVLVIFTACFGKIVGTLSVSLLCKMPMDESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPVVMAVYKPAKRKSKSNYSQRTIEREDPNSQLRILACFHSINNIPATINLIEASRGIEKKEGLCVYAMHLMELSERSSAILMVHKAKKNGLPFWNKGRADSNQIVVAFEAFRQLSRVSIRPMTAISPLSNMHEDVYNTAERKRAAFIILPFHKHQRLDGTLETTRADFRWVNKKVLDNAPCSVGILVDRGLGGGSHVTSSNVSSTKTVFFFGGRDDREALALGLRMAEHPGISLNVIRFIPSTNITVDSVAVNIINNNNIASNSASDEKVLAEFQKRVVENDSIKYEEILVNKGNEVIEAMKEYSRCNLMLVGQMPEGQCVASLNGKDIECPELGPVGGFLTSPEFSTSASVLVVQQFHGQLAASTSRTVVLPEKD 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46736001 46744475 - evm.model.ptg000003l.557 HCH6g1235 546729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1235 799 Gene3D - 35 440 IPR038770 -
HCH6g1235 799 PANTHER CATION/H + ANTIPORTER 11 785 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH6g1235 799 FunFam Cation/H(+) antiporter 15 35 437 - -
HCH6g1235 799 Pfam Sodium/hydrogen exchanger family 48 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0250 HCH-Chr2:38301674 HCH6g1235 HCH-Chr6:46736001 2.30E-205 dispersed
HCH4g1209 HCH-Chr4:8107414 HCH6g1235 HCH-Chr6:46736001 2.00E-86 dispersed
HCH5g0312 HCH-Chr5:1958812 HCH6g1235 HCH-Chr6:46736001 7.10E-84 dispersed
HCH6g0318 HCH-Chr6:4913428 HCH6g1235 HCH-Chr6:46736001 3.90E-136 dispersed
HCH6g0319 HCH-Chr6:4939420 HCH6g1235 HCH-Chr6:46736001 2.80E-142 dispersed
HCH6g1235 HCH-Chr6:46736001 HCH9g0653 HCH-Chr9:4341798 4.20E-201 dispersed
HCH6g1234 HCH-Chr6:46720635 HCH6g1235 HCH-Chr6:46736001 1.20E-296 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1235 K26731 - csv:101202937 1160.98