Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g1257 | ATGGAAACTGGGTGGAGTTGGGATCAAAAGTCATTGATTGGTGAGCTGATTCAGGGAATGGAACTGACAAAGCAATTGAGAGCAGAAATGAGTGCAGCCTCTGTAGCAGAAAGCAGGGGATCATTAGTGCAAGGAATTTTATCTTCATATGAGAAAGCTTTATTGATTCTGAATTGGAATGGAACAATGAATCAGTCTCAGATGGTAGAAGCAACTCCTGCTCTGCCAGAGTCTCCAATTTCTGTCAATGGAAGTCATTCAAGTGATGACTCTGGTAGAGGCCTCAAGGACAATCAGGACCCTAAAGAGGGATCAAAGAAGAGAAAGACACAGCCCAGATGGACAGAACAAGTGAGAGTGAACTCTGAGACCGGATTCGAAGGACCACACGAAGACGGATATAGCTGGAGAAAATATGGCCAAAAAGACATCCTTGGAGCAAAATATCCCAGAAGCTACTACAGATGCACTTTTCGTAGCACTCAGAATTGTTGGGCAGTTAAGCAAGTGCAGAGATCAGATGAAGACCCTTCGGTATTCGAGATTACATATCGAGGAAAGCACACTTGTTCGCAAGGGAACTATTTAGTTCAATCACTTCTTTCACCTGAAAAGAAGCAAAAGAGCCACGACAACGACGATCAGCAGCCGTTGCAAGAGAACTTACTCAGCTTCGAAACTATTGAGAAAATTGAGAATCCGGAAAACAAAAAGGCACCTACATTCTGTTTTGCTTCAACTTCACAAGACATTGAAAATGCTAGCTTTTCACGTTTAGCCCTTGACATTGACACTAGCTTGGGAAGCTTTTCTCAGTCATTTATCTCCCCAACCACACCAGATTCAAATTATCTTGTTCCATCTCCATTCCAAAGGAGCAACACAGGAGGGGCTCATAACTTGCCACGTCCAGAATCGGATGTCAACGAGATTTTCTCGTCCCACAATTCACCCATCAATTCACCACTTCTGGATTGGGATTTTGCACTGGATTCAGAACAAATCAACTCAAATTTTTCATTCGCTTCCACGGGATTTTTCTATTGA | 1047 | 42.88 | METGWSWDQKSLIGELIQGMELTKQLRAEMSAASVAESRGSLVQGILSSYEKALLILNWNGTMNQSQMVEATPALPESPISVNGSHSSDDSGRGLKDNQDPKEGSKKRKTQPRWTEQVRVNSETGFEGPHEDGYSWRKYGQKDILGAKYPRSYYRCTFRSTQNCWAVKQVQRSDEDPSVFEITYRGKHTCSQGNYLVQSLLSPEKKQKSHDNDDQQPLQENLLSFETIEKIENPENKKAPTFCFASTSQDIENASFSRLALDIDTSLGSFSQSFISPTTPDSNYLVPSPFQRSNTGGAHNLPRPESDVNEIFSSHNSPINSPLLDWDFALDSEQINSNFSFASTGFFY | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 46898098 | 46899598 | - | evm.model.ptg000003l.535 | HCH6g1257 | 546751 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g1257 | 348 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 7 | 277 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
HCH6g1257 | 348 | Pfam | WRKY DNA -binding domain | 131 | 190 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1257 | 348 | MobiDBLite | consensus disorder prediction | 90 | 114 | - | - | |
HCH6g1257 | 348 | ProSiteProfiles | WRKY domain profile. | 131 | 188 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1257 | 348 | SMART | WRKY_cls | 130 | 192 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1257 | 348 | SUPERFAMILY | WRKY DNA-binding domain | 129 | 192 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g1257 | 348 | FunFam | WRKY transcription factor 53 | 116 | 193 | - | - | |
HCH6g1257 | 348 | MobiDBLite | consensus disorder prediction | 76 | 133 | - | - | |
HCH6g1257 | 348 | Gene3D | WRKY domain | 115 | 193 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0152 | HCH-Chr10:1252097 | HCH6g1257 | HCH-Chr6:46898098 | 8.20E-47 | dispersed | |
HCH6g1257 | HCH-Chr6:46898098 | HCH9g0839 | HCH-Chr9:5940006 | 1.90E-17 | dispersed | |
HCH1g0265 | HCH-Chr1:43490486 | HCH6g1257 | HCH-Chr6:46898098 | 8.80E-21 | transposed | |
HCH11g1296 | HCH-Chr11:44962589 | HCH6g1257 | HCH-Chr6:46898098 | 3.60E-43 | wgd | |
HCH5g0574 | HCH-Chr5:3954412 | HCH6g1257 | HCH-Chr6:46898098 | 3.30E-70 | wgd | |
HCH6g1257 | HCH-Chr6:46898098 | HCH7g1694 | HCH-Chr7:48840750 | 1.00E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33763 | PF03106 | WRKY | 4.00E-26 | CL0274 | HCH | TF |
Pathway information
