Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1257 ATGGAAACTGGGTGGAGTTGGGATCAAAAGTCATTGATTGGTGAGCTGATTCAGGGAATGGAACTGACAAAGCAATTGAGAGCAGAAATGAGTGCAGCCTCTGTAGCAGAAAGCAGGGGATCATTAGTGCAAGGAATTTTATCTTCATATGAGAAAGCTTTATTGATTCTGAATTGGAATGGAACAATGAATCAGTCTCAGATGGTAGAAGCAACTCCTGCTCTGCCAGAGTCTCCAATTTCTGTCAATGGAAGTCATTCAAGTGATGACTCTGGTAGAGGCCTCAAGGACAATCAGGACCCTAAAGAGGGATCAAAGAAGAGAAAGACACAGCCCAGATGGACAGAACAAGTGAGAGTGAACTCTGAGACCGGATTCGAAGGACCACACGAAGACGGATATAGCTGGAGAAAATATGGCCAAAAAGACATCCTTGGAGCAAAATATCCCAGAAGCTACTACAGATGCACTTTTCGTAGCACTCAGAATTGTTGGGCAGTTAAGCAAGTGCAGAGATCAGATGAAGACCCTTCGGTATTCGAGATTACATATCGAGGAAAGCACACTTGTTCGCAAGGGAACTATTTAGTTCAATCACTTCTTTCACCTGAAAAGAAGCAAAAGAGCCACGACAACGACGATCAGCAGCCGTTGCAAGAGAACTTACTCAGCTTCGAAACTATTGAGAAAATTGAGAATCCGGAAAACAAAAAGGCACCTACATTCTGTTTTGCTTCAACTTCACAAGACATTGAAAATGCTAGCTTTTCACGTTTAGCCCTTGACATTGACACTAGCTTGGGAAGCTTTTCTCAGTCATTTATCTCCCCAACCACACCAGATTCAAATTATCTTGTTCCATCTCCATTCCAAAGGAGCAACACAGGAGGGGCTCATAACTTGCCACGTCCAGAATCGGATGTCAACGAGATTTTCTCGTCCCACAATTCACCCATCAATTCACCACTTCTGGATTGGGATTTTGCACTGGATTCAGAACAAATCAACTCAAATTTTTCATTCGCTTCCACGGGATTTTTCTATTGA 1047 42.88 METGWSWDQKSLIGELIQGMELTKQLRAEMSAASVAESRGSLVQGILSSYEKALLILNWNGTMNQSQMVEATPALPESPISVNGSHSSDDSGRGLKDNQDPKEGSKKRKTQPRWTEQVRVNSETGFEGPHEDGYSWRKYGQKDILGAKYPRSYYRCTFRSTQNCWAVKQVQRSDEDPSVFEITYRGKHTCSQGNYLVQSLLSPEKKQKSHDNDDQQPLQENLLSFETIEKIENPENKKAPTFCFASTSQDIENASFSRLALDIDTSLGSFSQSFISPTTPDSNYLVPSPFQRSNTGGAHNLPRPESDVNEIFSSHNSPINSPLLDWDFALDSEQINSNFSFASTGFFY 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46898098 46899598 - evm.model.ptg000003l.535 HCH6g1257 546751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1257 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 277 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH6g1257 348 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1257 348 MobiDBLite consensus disorder prediction 90 114 - -
HCH6g1257 348 ProSiteProfiles WRKY domain profile. 131 188 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1257 348 SMART WRKY_cls 130 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1257 348 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g1257 348 FunFam WRKY transcription factor 53 116 193 - -
HCH6g1257 348 MobiDBLite consensus disorder prediction 76 133 - -
HCH6g1257 348 Gene3D WRKY domain 115 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0152 HCH-Chr10:1252097 HCH6g1257 HCH-Chr6:46898098 8.20E-47 dispersed
HCH6g1257 HCH-Chr6:46898098 HCH9g0839 HCH-Chr9:5940006 1.90E-17 dispersed
HCH1g0265 HCH-Chr1:43490486 HCH6g1257 HCH-Chr6:46898098 8.80E-21 transposed
HCH11g1296 HCH-Chr11:44962589 HCH6g1257 HCH-Chr6:46898098 3.60E-43 wgd
HCH5g0574 HCH-Chr5:3954412 HCH6g1257 HCH-Chr6:46898098 3.30E-70 wgd
HCH6g1257 HCH-Chr6:46898098 HCH7g1694 HCH-Chr7:48840750 1.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33763 PF03106 WRKY 4.00E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1257 - - - 0.0