Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1260 ATGATTGGCGAAGCTGTTGAGAATGGAGGAACCGATATGGTAATTGATGGATTCGAATCGAAGCCGGATAAAGTTTTGCCTGATGGATTTGATGCTAATTATCTCAAATTTTACTATGGAAAGATTTTTCCGTATGCCGATTTTTTTAAATGGATGTCTTATGGAAATGATGGGAAGCATCCAGGAAGTGATCAATCTTACTTTGGTCGAAGAGAGTTTTCGTTCACATTGGATAATGATATTTATCTGCGATTCCAGTCTTTCAATAATTTATCTGAAATGGAAAATTCTATCAAGGAAAAGTGTCCATTTAAAATTGATATCGGGCCTGTATACAGTGTGGATCCTGCAAAGAGACACGCATATGCACAAAGTGGTGATAATGTATTTTCTCCGGTGGAGAGAGAGCTAGTTTTTGATATCGATATGACAGATTATGACGATGTTAGATACTGTTGTTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCATTAATGACTGCTGCTATCAAAGTGATTGACACTGCCCTTAGAGATGACTTTGGATTTAACCACATTCTGTGGGTATATAGTGGCCGTCGTGGTGTTCACTGTTGGGTCTGTGATGGGAAAGCAAGAAGGTTGTCTAATGAACAGAGGGCTGCTATTGCTGGATATTTCCATTTATATCAGGGAAATGGAAACACTCACAAGAAAGTTTCTTTAACAGGTCCAGTTCTTCATCCATTTCTCGCGAGATCATACACAGAAGTTCTTGAGAATATTTTTGAGTCAAAATTGCTTTCTAATCAAAAGATTTTCTCAACTGAGGAGAGATATGAGAAAATCTTAGATATGATTCCTGATGAGTCTCTTACCTCAGAGCTTCGAGGAAAGTGGCAAGAAAACAGGCGATCCTCTAAAAAGGATGTTAATTCTACAAGATGGGAGCAGCTTAAAAATATGCTGCAATTAGGGAAACATAAGGCACAAGGTATGCGTAGGTACATTGAAGAGATTGTATTCTCTTTTACCTACCCCAGGCTGGATATGGAGGTTACTAAACACATGAACCATCTGTTAAAAGCACCATTCTGTATTCATCCCAAAACAGGTCGTGTTTGTGTACCTATTAACCCTGAACACTGTGAGGAGTTCGACCCTACTACTGTGCCAACTCTTGCCAAGCTTCTAGAAGAACTGAATGCAGCAGATATGGAAGTTGATGGTGATACTGATTGGGATAGAACCTCACTCGGCGAATCGATTAGGTTTTTCAGATCATCATTCTTACGGCCATTGCTGAAATCATGCAAGGAGGAGATAGAATCTTCATACAACACAAAAGTGCAACAACAATCGAAGAATTCTCTGAGTTGGTAG 1362 39.43 MIGEAVENGGTDMVIDGFESKPDKVLPDGFDANYLKFYYGKIFPYADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNNLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGDNVFSPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGKARRLSNEQRAAIAGYFHLYQGNGNTHKKVSLTGPVLHPFLARSYTEVLENIFESKLLSNQKIFSTEERYEKILDMIPDESLTSELRGKWQENRRSSKKDVNSTRWEQLKNMLQLGKHKAQGMRRYIEEIVFSFTYPRLDMEVTKHMNHLLKAPFCIHPKTGRVCVPINPEHCEEFDPTTVPTLAKLLEELNAADMEVDGDTDWDRTSLGESIRFFRSSFLRPLLKSCKEEIESSYNTKVQQQSKNSLSW 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46915818 46920635 + evm.model.ptg000003l.532 HCH6g1260 546754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1260 453 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 36 391 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
HCH6g1260 453 FunFam DNA primase 23 433 - -
HCH6g1260 453 SUPERFAMILY Prim-pol domain 32 397 - -
HCH6g1260 453 Gene3D DNA primase, PRIM domain 24 433 - -
HCH6g1260 453 PANTHER DNA PRIMASE SMALL SUBUNIT 33 438 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
HCH6g1260 453 CDD AE_Prim_S 44 381 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
HCH6g1260 453 Pfam DNA primase small subunit 139 372 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1260 K02684 - csv:101203146 832.787