Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1284 ATGGCTAATCGAGGAAGTGGGTCATTTTCATCGTCAAATGTTTCGGCTCAAGGTTCGGGAGGAGATGAGCTTTATGCTGAGTTATGGAAGGCTTCTGCGGGCCCACTTGTTGATGTTCCTCATGTTCAAGAGAAAGTCTTTTACTTTCCACAAGGTCATATGGAACAATTGGAGGCATCAACAAATCAGGAGCTAAATCAGAAACTTCCTTTGTTTAATCTTTCCTCCAAGATTCTTTGTCAAGTAGTCGATGTTCGGTTAATGGCAGAGCAGGAATCAGATGAGGTTTATGCACAAATAACTTTAATTCCAGAACCTAATCAAAATGAACCTACAAGTCCTGATCCTTTCGTCCCTGAATGTCCAAAACCGAAAGTCCACTCATTTTGCAAGGTTTTAACTGCTTCTGATACCAGTACCCATGGTGGATTCTCTGTGCTTCGTAAACATGCTACAGAATGCTTGCCTCCATTGGATATGACGCAGCAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCATATTTTTAGGGGTCAACCACGAAGGCATTTGCTAACAACTGGATGGAGCACCTTTGTTACTTCTAAGAGATTAGTTGCTGGGGATTCTTTTGTCTTCTTGAGGGGTGAAAATGGGGATTTACGTGTTGGAGTGAGACGTCTTGCTCGTCAACAAAGCAGCATGCCTTCGTCAGTGATTTCAAGTCACAGCATGCACCTAGGAGTGCTTGCTACTGCATCTCATGCTGTTGCAACCCAAACTCGCTTTGTTGTTTATTATAAGCCAAGGTCAAGCCAGTTTATTGTTAGCTTGAATAAGTACTTGGAAGCTATTAATAATAAGTTCTTAGTTGGGATGAGATTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGCACCATAGTTGGAGTTGAAGACATATCTTCTCATTGGACTGAATCAAAATGGCGATCACTGAAAGTTCAATGGGATGAACTTGCATCTATTCCCAGACCTGATAGGGTTTCACCATGGGAGATTGAACCTTTTATGGCTCCTACCTCTCCAAGCATTGCCCAACCAGTTCCAGTAAAGAATAAAAGGCCTCGGCCCCCACTTGAAATCCCAGATTCTGATAACTCTACTATAACAACTCTTCGACATCCTGGATCAACTCAGTCACATGATGATAGAACACAGCTGAGTGTTTCCGCTACCGATGTGAAGAGATTTGAAAATCATGTAATGTGGCATTATAAGCAAACAGATGTTAGCAGCAATGGCAATTCTGTATCAAGGACTCAGAATAATGGTTCCTGGTTAACTTCCCCCAATGGAAGTGGTTCTCCACATCCATTACAGGAGTCGACAGAGGATAGTAAAAGTATCTCTGTCTGGCCTGTTTTCCTTGGAGATCCAACTCCATGCATGCCACAGCCAAAGAGTGACTTGGTACACGACCTTGGGGAAAAAGGGAGGAAAGCCGAGGTGGTGACTAGCTGTCGATTGTTTGGGATTGAGCTGATTGATCATTCTAAAAGTTCAGTTCTTGTTGAAAGGGCATGTGATCAACCAATTAACGCATCTAGTGAGATGAATGAAAGCAATGTCAATACCTTGCTACTACCTAATGCAGAGCAGAACTCAGACCTTTCAAAAGTTTCTAAGGAAAGAAAACTCGGACTTCTACAAGTACCCCCGAAAGAGATTCAGCACAAGCAAAGCTGCTCTACCAACAGAAGCCGCACAAAGGTTCAAATGCAAGGGATGGCTGTGGGTCGTGCGGTGGACCTTACCATGTTGGAAGGGTACGATCAACTTATTGATGAACTGGAAAAGATGTTCGATATCGAGGGAGAACTTCACCCTCGTGATAAGTGGGAGATTGTCTTCACCGATGATGAAGGAGATATGATGCTCATGGGCGATTACCCATGGCTGGAGTTCTGTAACATGGTGAGAAGAATATATATATGGTCCAGTCAAGATGTGAAGACGAGTTCAGGTAGCAAACTTGCAATGTCTACAATCGAAGGTGACGGAACCATAATAACTTCGGAATCTGCCGATAGCTGA 2097 43.49 MANRGSGSFSSSNVSAQGSGGDELYAELWKASAGPLVDVPHVQEKVFYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDVRLMAEQESDEVYAQITLIPEPNQNEPTSPDPFVPECPKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGDLRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVATQTRFVVYYKPRSSQFIVSLNKYLEAINNKFLVGMRFKMRFEGEESPERRFSGTIVGVEDISSHWTESKWRSLKVQWDELASIPRPDRVSPWEIEPFMAPTSPSIAQPVPVKNKRPRPPLEIPDSDNSTITTLRHPGSTQSHDDRTQLSVSATDVKRFENHVMWHYKQTDVSSNGNSVSRTQNNGSWLTSPNGSGSPHPLQESTEDSKSISVWPVFLGDPTPCMPQPKSDLVHDLGEKGRKAEVVTSCRLFGIELIDHSKSSVLVERACDQPINASSEMNESNVNTLLLPNAEQNSDLSKVSKERKLGLLQVPPKEIQHKQSCSTNRSRTKVQMQGMAVGRAVDLTMLEGYDQLIDELEKMFDIEGELHPRDKWEIVFTDDEGDMMLMGDYPWLEFCNMVRRIYIWSSQDVKTSSGSKLAMSTIEGDGTIITSESADS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47092980 47096608 + evm.model.ptg000003l.508 HCH6g1284 546778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1284 698 MobiDBLite consensus disorder prediction 384 407 - -
HCH6g1284 698 ProSiteProfiles PB1 domain profile. 587 668 IPR053793 -
HCH6g1284 698 FunFam Auxin response factor 127 231 - -
HCH6g1284 698 Gene3D - 126 230 IPR015300 -
HCH6g1284 698 SUPERFAMILY DNA-binding pseudobarrel domain 118 258 IPR015300 -
HCH6g1284 698 Gene3D - 290 361 - -
HCH6g1284 698 MobiDBLite consensus disorder prediction 360 407 - -
HCH6g1284 698 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
HCH6g1284 698 Gene3D - 583 675 - -
HCH6g1284 698 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
HCH6g1284 698 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
HCH6g1284 698 Pfam AUX/IAA family 579 623 IPR033389 -
HCH6g1284 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 675 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH6g1284 698 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
HCH6g1284 698 FunFam Auxin response factor 290 361 - -
HCH6g1284 698 MobiDBLite consensus disorder prediction 431 467 - -
HCH6g1284 698 Pfam Auxin response factor 255 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH6g1284 698 SUPERFAMILY CAD & PB1 domains 580 663 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0173 HCH-Chr10:1430914 HCH6g1284 HCH-Chr6:47092980 7.70E-212 dispersed
HCH5g0663 HCH-Chr5:4792412 HCH6g1284 HCH-Chr6:47092980 4.40E-239 dispersed
HCH6g1284 HCH-Chr6:47092980 HCH8g1520 HCH-Chr8:49320730 2.10E-156 dispersed
HCH6g1284 HCH-Chr6:47092980 HCH14g1100 HCH-Chr14:37927991 5.30E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33766 PF02362 B3 1.70E-21 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1284 K14486 - csv:101213942 1080.86