Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1287 ATGACCGAGCCCGACGCCGACCACCCATCTAACCCCTGTCCCAAAACACACGATGTTCGTACCATCCGTACAACTATCATCGATGACAGGACCCCTCTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCGTTGGATCATATCCCTTCATTTTCCTCTGATCATCTCTCTTCTCCTCTTTGGGCCTTTTCTGAATCTGATGATCATCAAGATCCCAAATTTGCTTCTTATTCTTGCTCTTTACTCGGTACTCCCAATTCAAATTCAGTCTCACAAAAGCCAATTGAGAATCACAAATTTAAGATTCTTCCAGTTCAATCCTCATCATGGGGACTAACCCCATTAGAAAATCCAGATGGGTATTGCTTAATCAAAGAGAAAATGGCTCAAGCTCTGAGATACATCAAAGAATCATCTGACCAACATGTTCTAGCTCAAGTTTGGGCGCCTGTTAAAAATGGCGGTAGATTCGTTCTTTCAACGTCCGGGCAACCGTTTGTCCTTGATACTCAGAGCAATGGGCTTCATCAGTATAGGATGGCGTCTCTTATGTATATGTTTGCGTTGGATACGGATACAGATGGTTTTCTTGGACTCCCTGGTCGTGTTTTCCGACAAAAATTGCCTGAATGGACTCCGAATGTGCAGTATTACTCTAGCAAAGAGTATCCGCGACTTAGTCATGCCCTTCATTACAATGTTCAGGGGACCTTGGCTTTGCCTGTTTTCGACCCTTCTGGCCAGTCTTGTCTTGGTGTTCTTGAGCTCGTTATGACCTCACCAAAGATCAATTATGCACCGGAAGTGGACAAAGTCTGCAAAGCCTTAGAGGCGGTCAATTTAAAAAGTTCCGAGATTTTGGATCATCCAAATTCCCAGATTTGCAATGAAGGTCGACAGAATGCTCTTGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAAATCATAAATTACCATTGGCTCAAACCTGGGTTCCATGCAGGCATCGCAATGTGCTGGCCTATGGTGGAGGCTTGAAGAAAAACTGTACTAGTTTTGATGGTAGTTGCATGGGACAGATCTGTATGTCCGCAACTGAGGTAGCATTCTATGTTGTTGATGCTCACATGTGGGGTTTTCGGGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGAGTTTCTGGGAGAGCATTTTCATCCCACAGCTCATGTTTTTGTGGAGATATCACCCAGTTCGGCAAAACTGAATACCCTTTGGTACATTATGCACTCATGTTTGGATTAAAGAGCTCTTTTGCTATCTGCTTAAGGAGCGCATTTACTGGAGATGATGAGTACATTCTGGAATTTTTTCTGCCACCCAGCATCACAGAATATCAGGATCAAAAAACTTTGTTGGGTTCCTTATTGGCCACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGAAGGAAGAGAAACTCGTTGAAATCATTCAAGCATCAAGAAGTGAAGGATTTGATTCTAGACTTGAATACATTCAAATTCCTCAATCTACGGAGTTGCCACGTGAGCCTGCCATAATGCCAAATGCAGGAGAGGTAGTTGCATTAGAAACATTGAAACAGCAAACTTTTGTGGCTCATGATGCTCTAAAGGAAGAGAGCAATACTACTCGGGAGGCGGAAAGCCACAATCCTATTCCTTGTACAACGAATAAAGAAACAAAAAAAACATCAGAAAGGAAACGAGGAAAAGCAGAGAAATCAATTAGTTTGGAGGTTCTACAACAATATTTTGCTGGCAGCCTTAAGGATGCTGCTAAAAGCCTTGGTGTCTGCCCAACTACAATGAAGCGAATCTGCAGGCAACACGGGATCTCACGGTGGCCGTCTCGAAAGATCAACAAGGTTAACCGTTCTCTTTCAAAGCTAAAGCGCGTGATTGAATCTGTTCAAGGTGCTGAAGGAGCATTTGGAATATCTTCTCTGGCTACAAGTCCTCTTCCTGTTTCTGTTAGTCCGAATTCTCATCCCGTTACTCCGGATGGGTCCAATCAACAAAATTTGGTGGCTAGTCATCCTTCTGATCTTCAAAATAAAGATACAAACACTTCAGAAACACAGACAAATAACATACATGCTAGAATAGATGATCAATTACATAGGGGACTGTTGAGTCCAGGAGAACAGATTCATGAGCCTGGGTTTCTGCCCAAGTTTGAAAATGGCTCTAACAATTATAGGACAGGAAGTGGATCAAGGGAAGAGAGCACCGGGACCCCTACTTCTCACGGTTCTTGCCAAGGTAGTCCTGCAATTGACAGTGCAGTAGCAAATAATCCCATTGCTATTCCTCATCAAGAACAATGTGTTAGAAGAGAATCTCCTGAAGTGACATTCCATCCAATCGAGACACTGAATATATCGGCATCTGCCTATCCAATTCCAGATACAGTTATGATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAAGATGCAGGAAGTTCCAAGGATTTAAGAAATCTCTGCCCTTCGGTAGCGGATGCCATTTTAGATGAGCAAGTGCCTGAATTTTGTTGGCCAAACCCTCCTGATCTAACTCTGAATCAACCCATGGACTCTGTTTGTCACACAGCCCCTCATCTATCAGTCAGGCAAGACACAAGAAGGATGACTATCAAGGCTACCTACAAGGAAGATATCATTAGATTTCGAATTCCCTTCAGTTCCGGTATCGTGGAATTAAGAGAAGAAGTGGCAAAGAGATTGAAGTTGGAGGTTGGTACATTTGATATCAAATACATGGACGATGATCGGGAGTGGGTTCTGATCGCCTGTGATGCCGACCTGCAAGAGTGTGTAGATATTTCAAAATCATCAGGTAGCAATATAATTAGATTGTTGATTCATGATTTAAATGTCAATCTTGGGAGTTCATGTGAGAGTACTGGGGAGTGA 2958 43.04 MTEPDADHPSNPCPKTHDVRTIRTTIIDDRTPLMDFDLDLDIPWPLDHIPSFSSDHLSSPLWAFSESDDHQDPKFASYSCSLLGTPNSNSVSQKPIENHKFKILPVQSSSWGLTPLENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKNGGRFVLSTSGQPFVLDTQSNGLHQYRMASLMYMFALDTDTDGFLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELVMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNSQICNEGRQNALAEILEVLTVVCENHKLPLAQTWVPCRHRNVLAYGGGLKKNCTSFDGSCMGQICMSATEVAFYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFGKTEYPLVHYALMFGLKSSFAICLRSAFTGDDEYILEFFLPPSITEYQDQKTLLGSLLATMKQHFYTLKVASGINLEKEEKLVEIIQASRSEGFDSRLEYIQIPQSTELPREPAIMPNAGEVVALETLKQQTFVAHDALKEESNTTREAESHNPIPCTTNKETKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVSVSPNSHPVTPDGSNQQNLVASHPSDLQNKDTNTSETQTNNIHARIDDQLHRGLLSPGEQIHEPGFLPKFENGSNNYRTGSGSREESTGTPTSHGSCQGSPAIDSAVANNPIAIPHQEQCVRRESPEVTFHPIETLNISASAYPIPDTVMMVEPEEPFGGMLIEDAGSSKDLRNLCPSVADAILDEQVPEFCWPNPPDLTLNQPMDSVCHTAPHLSVRQDTRRMTIKATYKEDIIRFRIPFSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLLIHDLNVNLGSSCESTGE 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47127249 47131055 + evm.model.ptg000003l.505 HCH6g1287 546781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1287 985 Pfam RWP-RK domain 586 633 IPR003035 -
HCH6g1287 985 SUPERFAMILY CAD & PB1 domains 885 972 - -
HCH6g1287 985 SMART PB1_new 890 972 IPR000270 GO:0005515(InterPro)
HCH6g1287 985 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
HCH6g1287 985 MobiDBLite consensus disorder prediction 731 767 - -
HCH6g1287 985 MobiDBLite consensus disorder prediction 739 767 - -
HCH6g1287 985 MobiDBLite consensus disorder prediction 666 705 - -
HCH6g1287 985 PANTHER PROTEIN NLP8 56 984 IPR045012 GO:0003700(InterPro)
HCH6g1287 985 CDD PB1_NLP 891 971 IPR034891 -
HCH6g1287 985 Gene3D - 887 971 - -
HCH6g1287 985 MobiDBLite consensus disorder prediction 548 584 - -
HCH6g1287 985 Pfam PB1 domain 891 971 IPR000270 GO:0005515(InterPro)
HCH6g1287 985 Pfam NLP protein GAF domain 294 477 IPR055081 -
HCH6g1287 985 ProSiteProfiles PB1 domain profile. 890 972 IPR053793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1287 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0059 HCH-Chr12:314113 HCH6g1287 HCH-Chr6:47127249 2.10E-119 dispersed
HCH5g1219 HCH-Chr5:42653094 HCH6g1287 HCH-Chr6:47127249 6.20E-122 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1287 . 180 985 NLP Transcription Factor Family AT1G64530 50.4 1.2e-212 736.5
HCH6g1287 . 259 985 NLP Transcription Factor Family AT4G24020 55.1 6.1e-201 697.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33767 PF00564 PB1 2.80E-18 CL0072 HCH TF