Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1296 ATGGGCATCTTTCTGGTCAAATTCCGAGGCTTGTTGGCTCTGCACATTCTACTTCTTTGTATTGCAATTGATAGAAGCATTGGCATCACCTCTGATGGTGAGGCACTTCTAAGCTTCAGGATGGCAATTACTAGTTCTGATGGGATCATCCTTCAGTGGAGACCAGAGGATCCAAACCCATGTAACTGGACAGGAGTGGTCTGTGATTCAAAAACTAAGAGAGTAGTGTCATTGGATCTCTCGCGTCATAAACTGAGTGGGTTCATATCGCCCGAACTTGGGAAGCTAGACCAATTGAAGACCCTAAACCTTTGTGATAACAACTTCTATGGAACAATACCATCAGATTTGGGAAACTGCTCGCAGTTGCAGGATATGTTTTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCAATGAATTGGGAAATCTTCCTCAGTTGGAAATATTGGACGTTTCGAGCAACTCACTCAGTGGAAATATCCCAATATCCCTTGGGAACTTGGATAAACTCACAATTCTCAATGTGTCAACAAATTTTTTGATTGGACCAATACCTTCTGATGGTGTTCTTACCAAGTTTTCAGAGACTTCCTTTGTTGGAAATCGTGGGTTGTGTGGGAAACAAGTCAATGTTACTTGCAAAGATAACAATGGAGGATCTGGAACAAATTCTGACTCCTCAAGCTCAGCTCAAAATCAAGCAAGGAAGAAGTACTCTGGCCGGCTGCTTATTAGTGCATCAGCTACTGTTGGCGCATTACTTCTTGTTGCACTTATGTGTTTTTGGGGTTGCTTTCTTTATAAACGATTTGGTAAAAATGAGAAGAAAGGTCTTGCTAAGGATGTCGGCGGAGGTGCGTCAATTGTTATGTTTCATGGAGATCTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACTTTGAATGAGGAACACATAATAGGTTCTGGGGGTTTTGGAACAGTTTACAAGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTCTAAAGATAAATGAGGGTTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTAAAGCACCGGTACCTTGTTAATTTGAGAGGATATTGCAATTCTCCTACATCGAAACTGTTGATTTATGATTACCTATCTGGGGGTAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGACTGGGATACACGCTTGAATATTATAATGGGAGCTGCAAAAGGATTGGCCTATCTGCATCATGATTGTTCACCCAGAATCATACATCGGGATATAAAGTCAAGCAACATTTTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAACTTCTGGACGATGATAAATCCCACATTACGACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAGTATATGCAAAGCGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTCCTGGTACTTGAAGTGCTGAGTGGAAAGCGCCCTACAGATGCATCATTTATTGAGAAAGGCCTGAATATTGTTGGCTGGCTAAATTTTCTTATATCAGAGAACAGACAGCGAGAAATAGTTGATACACAATGTGAAGGGGTTCAGATAGAAACCCTCGACGCATTGCTCACACTTGCTATTCAGTGTGTTTCTTCTAGTCCCGATGATCGACCAACCATGCACCGAGTAGTTCAATTCTTTGAATCTGAGGTTATGACGCCATGCCCAAGTGACTTCGATGATTCGAGTTCTGATTAA 1788 41.39 MGIFLVKFRGLLALHILLLCIAIDRSIGITSDGEALLSFRMAITSSDGIILQWRPEDPNPCNWTGVVCDSKTKRVVSLDLSRHKLSGFISPELGKLDQLKTLNLCDNNFYGTIPSDLGNCSQLQDMFLQRNYLSGVIPNELGNLPQLEILDVSSNSLSGNIPISLGNLDKLTILNVSTNFLIGPIPSDGVLTKFSETSFVGNRGLCGKQVNVTCKDNNGGSGTNSDSSSSAQNQARKKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNEKKGLAKDVGGGASIVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYKLAMDDGNVFALKNILKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISENRQREIVDTQCEGVQIETLDALLTLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSSSD 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47172440 47178709 - evm.model.ptg000003l.496 HCH6g1296 546790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1296 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1296 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
HCH6g1296 595 SMART serkin_6 310 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1296 595 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
HCH6g1296 595 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 588 - -
HCH6g1296 595 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
HCH6g1296 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1296 595 SUPERFAMILY L domain-like 30 188 - -
HCH6g1296 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
HCH6g1296 595 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
HCH6g1296 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 164 579 IPR050647 -
HCH6g1296 595 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
HCH6g1296 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
HCH6g1296 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1296 595 Gene3D Phosphorylase Kinase; domain 1 286 385 - -
HCH6g1296 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0977 HCH-Chr12:7091279 HCH6g1296 HCH-Chr6:47172440 4.20E-84 dispersed
HCH6g1296 HCH-Chr6:47172440 HCH8g1323 HCH-Chr8:48198566 9.70E-126 dispersed
HCH6g1296 HCH-Chr6:47172440 HCH3g0284 HCH-Chr3:1800580 1.90E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81593 PF00069 Pkinase 3.30E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1296 - - - 0.0