Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1301 ATGGGCGGGGGGGAGTCAAGAAAATGGCTAGTATTAGTGGCGATAATATGGATTCAAGCATTCACAGGAACGAATTTCGATTTCTCGGCATATTCAACGAGGTTAAAATCGATATTGGGAATTTCGCAAGTGCAGCTTAATTATTTAGCTACAGCTTCGGATCTAGGAAAGGCATTAGGTTGGTCATCTGGATTGGCGTTGCTTCGTTTTCCGCTTTCGGTGGTTTTATTCATAGCTGCTTTTATGGGTCTTATTGGATATGGTCTTCAATGGCTTCTTATTACCAATATTATCTCCTTGCCTTATTTCCTGGTGTTCTTTCTATGTTTGTTGGCTGGTTGCAGCATTTGTTGGTTTAACACAGTATGTTTTGTTCTGTGCATTAGAAACTTCTCAGCAAATAGGCCCTTAGCATTGTCTCTTACTGTGAGTTTCAATGGTGTTAGTGCAGCTATTTACACACTTGCTGGTAAAGCCATCGACTCTTCCTCACCTCCAGTATACCTCCTCCTTAACGCCGTCCTTCCGCTCATCGCTTCCGTAGCTGCCCTCCCACCCATTCTCTTGCAACCGCCTCTACATTCACTATCACTTTCCTCCGACGCCATCCGTAAAGACTCCCTCATTTTCCTCTTCTTGAACTTCCTTGCCGTCCTCATTGGAATTTACCTTCTTCTCTCTGGCTCCACCGCCTCCTCCCATCCCACCACCGCGCATCTTCTCTTCCTCGGAGCCATTTTCCTCCTCATCTTACCTTTGTGTATTCCTGGCATTGTTTACGCCAAAAACTGGTTTTATCAAACCATTACTTCTAGCTTCACTCTTGAAGGATCAGGTTTCCTTCTAGTCCATGATGAAGATCTTGAGTTTCATAAAGAGCTGTTACTTAGCCGTGAAGCTAATAGTGATAGCTTAGCCAATGGAGGATCTCAGCTCTTATCGGAATCTTTCGTGTCAATTAACAGTGTCATTGATGGGAAGGGGTGTTTTCAATCTATGATCAATAGAGATCAACTGTTGATGCTTGGAGAAGAACATTTGTCTCGACGGTTGGTGAAACGGTTTGATTTTTGGCTGTATTTCTTAGCTTACTTTTGTGGAGGAACAATTGGTCTCGTTTATAGTAACAACTTAGGTCAAATAACACAGTCGTTAGGATTAGGTTCAAGTACCACTGCCATTGTTACACTCTACTGCTCCTTCTCCTTCTTCGGTCGATTACTCTCCGCCATACCGGACTACATTCGAGCGAAATTGTATTTTGCTAGAACAGGGTGGCTGACAATAGCCTTGATTCCAACTCCGATTGCTTTCTTCTATTTAGCAGCGTCTAGCAGTTGGGTGGCAGTGTACATCGGCTCGGCGCTTATCGGGCTGAGCTCGGGGTTCATATTTGCAGCTGCTGTTTCCATTACGGCGGAGCTTTTCGGGCCAAACAGTTTAGGCGTAAACCACAACATCTTGATAACGAATATACCGATCGGATCGCTATTGTACGGGATGTTGGCAGCAGTAGTGTATGATGGTCATGGAAGCACAGGGCGTGGAAGAATGAATGGCGGTGATGCAATTGTTTGCATGGGAAGACAATGTTATTTGTTGACATTCGTGTTTTGGGGATGCATTTCAGCTCTTGGATTGGCTTCGAGTGTGTTGTTGTTCCTTAGAACCAGACATGCTTATGACATTTTTGAACGTAACAGGATTTCTTCTTCTTCAACTCAATTGTTTTAG 1734 43.94 MGGGESRKWLVLVAIIWIQAFTGTNFDFSAYSTRLKSILGISQVQLNYLATASDLGKALGWSSGLALLRFPLSVVLFIAAFMGLIGYGLQWLLITNIISLPYFLVFFLCLLAGCSICWFNTVCFVLCIRNFSANRPLALSLTVSFNGVSAAIYTLAGKAIDSSSPPVYLLLNAVLPLIASVAALPPILLQPPLHSLSLSSDAIRKDSLIFLFLNFLAVLIGIYLLLSGSTASSHPTTAHLLFLGAIFLLILPLCIPGIVYAKNWFYQTITSSFTLEGSGFLLVHDEDLEFHKELLLSREANSDSLANGGSQLLSESFVSINSVIDGKGCFQSMINRDQLLMLGEEHLSRRLVKRFDFWLYFLAYFCGGTIGLVYSNNLGQITQSLGLGSSTTAIVTLYCSFSFFGRLLSAIPDYIRAKLYFARTGWLTIALIPTPIAFFYLAASSSWVAVYIGSALIGLSSGFIFAAAVSITAELFGPNSLGVNHNILITNIPIGSLLYGMLAAVVYDGHGSTGRGRMNGGDAIVCMGRQCYLLTFVFWGCISALGLASSVLLFLRTRHAYDIFERNRISSSSTQLF 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47192178 47196531 - evm.model.ptg000003l.491 HCH6g1301 546795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1301 577 Pfam Nodulin-like 8 256 IPR010658 -
HCH6g1301 577 Gene3D MFS general substrate transporter like domains 349 562 IPR036259 -
HCH6g1301 577 SUPERFAMILY MFS general substrate transporter 7 559 IPR036259 -
HCH6g1301 577 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 561 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1492 HCH-Chr3:52945267 HCH6g1301 HCH-Chr6:47192178 2.70E-74 dispersed
HCH6g1301 HCH-Chr6:47192178 HCH6g1344 HCH-Chr6:47509233 6.00E-165 dispersed
HCH6g1301 HCH-Chr6:47192178 HCH2g0539 HCH-Chr2:49198931 2.10E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1301 - - - 0.0