Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1312 ATGTTCTGTTTCTTGGCTTCTGTTGTTTTCATCTTCTTCTTCTTCTTCCTCCTCCTTCGTTCCTTTCTGAAATCCTCGGCTTTCACGAGCCGAAAACTTCCCCTTCCACCGGGTTCTATGGGTTGGCCTTATATGGGTGAAACCTTTCAACTCTATTCTCAAGATCCCAATGTCTTCTTTGCCTCCAAAAAGAAGAGATATGGTCCAATTTTCAAGTCTCACATATTGGGTTATCCATGTGTGATGATTTCAAGTCCTGAGGCTGTGAAGTTTGTGTTGGTGAACAAAGCTCATCTCTTTAAGCCTACATTTCCAGCGAGTAAAGAGAGGATGTTAGGCAAAAATGCAATTTTCTTTCACCAAGGAGACTATCATGCCAAATTGAGACGGCTCGTTCTTCGCGCTTTCATGCCCGAAGCGATCAGAAACATCGTCCCGAGTATCGAATCCATTGCTAAAGAAACTGTTCAATCATGGGAAGGCCAGTTGATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGATATTTCTTTGCTTTCAATATTTGGAAAAGACGAAGCTCTTTACAGAGAAGACTTGAAGCGATGCTACTACATTATCGAGAAAGGCTACAATTCTATGCCGATTAACTTGCCGGGAACACTCTTCCACAATGCCATGAAGGCAAGGAAAGAGTTGGCCCAGATCCTAGCTAAAATCCTCTCAACCAGGAGAGAGATGAAACACGACCACAATGACCTACTTGGATCTTTCATGGGGGAAAAGGAAGGCCTCACCGATGAACAAATCGCCGATAATGTTATCGGTATCATCTTCGCAGCCCGAGACACGACTGCAAGTGTTCTAACATGGATCTTGAAGTATCTTGGAGAGAACCCAAGTGTTCTTCAAGCTGTTACTGCTGAACAAGAAGCGATAAGAAAAGAAAAACAGAATGGGGAAGAAAATCTAACTTATGCAGATACCAAGAAGATGCCAATAACTTCAAGAGTAATTCAAGAAACTCTCAGAGTGGCCTCAGTTTTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATATGATGGCTATCTGATACCAAAAGGATGGAAAGTTTTGCCTCTTTTTAGAAACATTCATCACAGTCCAGAAATTTTTCCTCAACCAGAGAAGTTTGATCCATCAAGATTTGAGGCTGCTCAGAAGCCCAATACATACATGCCATTTGGCAATGGGACCCACTCATGTCCAGGGAATGAATTAGCCAAGCTGGAGATGCTGATTCTGCTCCATCATTTTACTACCAAGTACAGGTGGAGTGTGGTGGGTGAACAGGAAGGGATTCAGTATGGCCCATTTGCTCTTCCCCATAATGGACTGCCCATTAGAATCTCTCTCAAGAAGTAG 1392 42.67 MFCFLASVVFIFFFFFLLLRSFLKSSAFTSRKLPLPPGSMGWPYMGETFQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMISSPEAVKFVLVNKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRAFMPEAIRNIVPSIESIAKETVQSWEGQLINTFQEMKMFAFDISLLSIFGKDEALYREDLKRCYYIIEKGYNSMPINLPGTLFHNAMKARKELAQILAKILSTRREMKHDHNDLLGSFMGEKEGLTDEQIADNVIGIIFAARDTTASVLTWILKYLGENPSVLQAVTAEQEAIRKEKQNGEENLTYADTKKMPITSRVIQETLRVASVLSFTFREAVEDVEYDGYLIPKGWKVLPLFRNIHHSPEIFPQPEKFDPSRFEAAQKPNTYMPFGNGTHSCPGNELAKLEMLILLHHFTTKYRWSVVGEQEGIQYGPFALPHNGLPIRISLKK 463
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 47261063 47263271 - evm.model.ptg000003l.480 HCH6g1312 546806
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1312 463 Coils Coil 297 317 - -
HCH6g1312 463 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 404 413 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH6g1312 463 Gene3D Cytochrome P450 24 461 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 SUPERFAMILY Cytochrome P450 29 459 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS P450 superfamily signature 402 411 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS P450 superfamily signature 411 422 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 FunFam Abscisic acid 8 25 461 - -
HCH6g1312 463 PANTHER CYTOCHROME P450 26 34 432 - GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
HCH6g1312 463 Pfam Cytochrome P450 36 440 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 283 309 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 263 280 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 411 434 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 401 411 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g1312 463 CDD CYP90-like 65 460 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1387 HCH-Chr3:51854404 HCH6g1312 HCH-Chr6:47261063 1.50E-152 dispersed
HCH5g0291 HCH-Chr5:1760585 HCH6g1312 HCH-Chr6:47261063 8.70E-64 dispersed
HCH5g1149 HCH-Chr5:38461898 HCH6g1312 HCH-Chr6:47261063 4.80E-22 dispersed
HCH6g0940 HCH-Chr6:44195356 HCH6g1312 HCH-Chr6:47261063 6.60E-61 dispersed
HCH6g1312 HCH-Chr6:47261063 HCH7g0640 HCH-Chr7:6303776 2.70E-152 dispersed
HCH6g1312 HCH-Chr6:47261063 HCH4g0644 HCH-Chr4:4222083 5.90E-155 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1312 K09843 - csv:101212508 816.224