Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1323 ATGAATATCTTAAGCATCCTTCTTTCATCCCTAGTTGCTCTTTTTGCTTTTCTCATCCTCAATCCAAACCTATCATTATTCCTCAGACATGTCATTGTTGATCACAGTTTCATACACACTTTCTCCACCGTCCTCGGCCATGATGCTATCGGCTGCCACCACGTCCACCGCCACCACCATCACCACCATGATGATGAAGGGGATATAGTTTCCATTTGTGAAGGTTTTCCTGCTAACTTCACTCCGTCGGATACCAACACTACCTCGATATTTTGCGTCGACCAGAACGGATGTTGCAACTTTACGACGGTTCAGGCTGCGGTCGACGCCGTGCCGAATCTGAGCCAGAAAAGAAACATAATTTGGATCAACAGCGGAATCTATTTTGAGAAGGTAATGGTTCCAAAATCGAAACCAAACATAACATTTCAAGGACAAGGCTTTTTTACGACAGCAATTGCTTGGAACGACACAGCGAATTCTTCCCATGGGACATTTTATAGTGGCTCTGTCCAAGTTTTCTCTTCCAATTTTATTGCCAAGAATATTAGCTTCATGAACGTGGCGCCAATTCCAGGGCCTGGCGATATCGGAGCACAAGCGGTGGCGATTAGAATCGGCGGAGACCAAGCGGCGTTCTGGGGCTGTGGATTCTTCGGAGCTCAAGACACACTTCACGACGATCGCGGCCGCCATTACTTCAAGGATTGTTACATTCAAGGCTCCATCGATTTCATCTTCGGCAATGGAAAATCCTTCTACGAGAGTTGCCAGTTAGTGTCGATGGCGAATCCGGTGCCGCAAGGATCGAAGTATATAAACGGAGCAGTCACCGCTCACGGCCGAGCTTCCGCCGACGAGAACTCCGGTTTTGCTTTCGTGAATTGCACCGTCGGAGGGACCGGCAGAGTCTGGCTCGGTCGGGCGTGGCGGCCTTTTTCTCGCGTCGTGTTTGTTTCCACCGTCATGTCGGATATTATCGCGCCGGAGGGTTGGAATGACTTTAATGACCCTGCTAGAGACCAGACCATCTTCTATGGAGAATACAATTGCACAGGTGTAGGAGCCAATATGAGCATGAGGGCTCCTTATGTCCAGAGGCTGAATGATACACAAGCTTCTTCTTTTCTCAACCTCTCCTTCATTGATGCTGATCAGTGGCTACAATCTTACTGA 1176 48.38 MNILSILLSSLVALFAFLILNPNLSLFLRHVIVDHSFIHTFSTVLGHDAIGCHHVHRHHHHHHDDEGDIVSICEGFPANFTPSDTNTTSIFCVDQNGCCNFTTVQAAVDAVPNLSQKRNIIWINSGIYFEKVMVPKSKPNITFQGQGFFTTAIAWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGKSFYESCQLVSMANPVPQGSKYINGAVTAHGRASADENSGFAFVNCTVGGTGRVWLGRAWRPFSRVVFVSTVMSDIIAPEGWNDFNDPARDQTIFYGEYNCTGVGANMSMRAPYVQRLNDTQASSFLNLSFIDADQWLQSY 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47351196 47353984 - evm.model.ptg000003l.469 HCH6g1323 546817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1323 391 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
HCH6g1323 391 FunFam Pectinesterase 85 391 - -
HCH6g1323 391 Pfam Pectinesterase 93 384 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH6g1323 391 Gene3D - 84 391 IPR012334 -
HCH6g1323 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 77 389 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH6g1323 391 SUPERFAMILY Pectin lyase-like 90 389 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0338 HCH-Chr11:3130045 HCH6g1323 HCH-Chr6:47351196 5.10E-102 dispersed
HCH6g0417 HCH-Chr6:10080166 HCH6g1323 HCH-Chr6:47351196 6.10E-64 dispersed
HCH6g1323 HCH-Chr6:47351196 HCH8g0695 HCH-Chr8:43665010 4.80E-81 dispersed
HCH6g1323 HCH-Chr6:47351196 HCH8g0571 HCH-Chr8:42526737 7.10E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1323 - - - 0.0