Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1335 ATGGCAGGTGGAGGTGAAGGGACAACCTTAGAGTTCACTCCGACGTGGGTTGTGGCTGCTGTTTGCACGGTCATCGTCGCCATTTCTCTTGCTTTAGAACGTCTTCTTCACGTCCTCGGTACATACCTCAAGAAGAAGAATCAAAAGCCTCTCAATGAAGCTTTACAGAAAGTTAAAGAAGAATTGATGCTTTTGGGGTTTATTTCACTTCTTCTCACTGTATTTCAAGGCGCTATCTCCAAATTTTGTGTTCCTGAGAGTTTGACTTTGCATTTTCTTCCTTGCGATCTGAAAGATAAACCTAAAGAGGAACATGATTCTTCTTCTTCCAATTCGTCAACGACAGAACATTTTCAAACTTTCTTTGCTTCAAGTATTTCTGGTACTGCTAGGCGCCTTTTGTCTGAGGGATCAGCATCTCAGATTGGATATTGTGCTAAAAAGGATAAGGTGCCATTACTATCACTTGAAGCATTGCATCATCTACATATCTTTATCTTCATCCTAGCTATTGTCCACGTGACATTTTGCGTTCTCACCGTAGTTTTTGGAGGACTTAAGATTCGTCAGTGGAAGCATTGGGAGGATTCTATTGCAAAGGAGAATTATGATACACAACAGGTTTTGGGACCAAAAGTCACCCATGTCCATCAACATGCTTTTATCAAGGATCATTTTTTGGGCATTGGTAAAGATTCAGCTCTTCTCGGTTGGTTGCATTCCTTTCTTAAGCAGTTTTATGCTTCTGTAACAAAATCAGATTATGCAACATTACGTCTCGGTTTCATTATGACTCACTGTCGGGGGAACCCCAAGTTTAATTTTCACAAATACATGATACGTGCGCTTGAAGATGATTTCAAGCATGTTGTTGGTATCAGTTGGTATCTTTGGATCTTCGTGGTTGTCTTCTTGTTCCTTAACGTAAATGGTTGGCATACATATTTCTGGATAGCATTTATTCCTTTCCTTCTTCTGCTTGCCGTGGGAACCAAGCTGGAACATGTGATAACACAATTGGCGCACGAGGTTGCAGAGAAGCATATAGCAATTGAAGGTGAACTAGTTGTGCAACCATCCGACGATCACTTTTGGTTTCAGGCGCCCCGTTTGATTCTCTTCTTGATCCACTTTATACTTTTCCAAAACGCTTTTGAGATTGGATTTTTCTTCTGGATATGGGTTCAATATGGCTTTGACTCCTGCATCATGGGGAAAGTCCGCTATATAGTTCCCAGGCTTATTATTGGGGTTTTTGTTCAGGTGCTTTGCAGTTACAGTACGCTACCGCTCTACGCCATTGTCACACAGATGGGAACTTCTTTCAAGAAAGCAATCTTTGATGAACATGTACAAGTAGGCCTAGTTGGTTGGGCTCAAAAGGTGAAGAAAAAGAAGGGACTGAGATTAGCTGCTGATGGCTCTAATCAAGGGAGCAAGGAAGGTAGTTCTACTGTGGGGATTCAGCTGGGAAATGTCATGCGCAAAGCATCGATACCCGAGGAGGTTCAGCCGATGGCTCCTTCGGCTCCGAGTAATCATTCTTAG 1548 42.25 MAGGGEGTTLEFTPTWVVAAVCTVIVAISLALERLLHVLGTYLKKKNQKPLNEALQKVKEELMLLGFISLLLTVFQGAISKFCVPESLTLHFLPCDLKDKPKEEHDSSSSNSSTTEHFQTFFASSISGTARRLLSEGSASQIGYCAKKDKVPLLSLEALHHLHIFIFILAIVHVTFCVLTVVFGGLKIRQWKHWEDSIAKENYDTQQVLGPKVTHVHQHAFIKDHFLGIGKDSALLGWLHSFLKQFYASVTKSDYATLRLGFIMTHCRGNPKFNFHKYMIRALEDDFKHVVGISWYLWIFVVVFLFLNVNGWHTYFWIAFIPFLLLLAVGTKLEHVITQLAHEVAEKHIAIEGELVVQPSDDHFWFQAPRLILFLIHFILFQNAFEIGFFFWIWVQYGFDSCIMGKVRYIVPRLIIGVFVQVLCSYSTLPLYAIVTQMGTSFKKAIFDEHVQVGLVGWAQKVKKKKGLRLAADGSNQGSKEGSSTVGIQLGNVMRKASIPEEVQPMAPSAPSNHS 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47461147 47466162 + evm.model.ptg000003l.457 HCH6g1335 546829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1335 515 PANTHER MLO-LIKE PROTEIN 1 2 484 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH6g1335 515 Pfam Mlo family 8 485 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH6g1335 515 MobiDBLite consensus disorder prediction 496 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1335 K08472 - - csv:101211868 900.968
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0293 HCH-Chr2:41922003 HCH6g1335 HCH-Chr6:47461147 2.10E-132 dispersed
HCH4g0860 HCH-Chr4:5508344 HCH6g1335 HCH-Chr6:47461147 9.50E-104 dispersed
HCH6g1335 HCH-Chr6:47461147 HCH2g1166 HCH-Chr2:54237510 2.50E-106 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1081 . 9 552 MLO family AT5G53760 70.3 4.7e-218 754.2
HCH13g0796 . 4 549 MLO family AT5G53760 70.2 6.3e-215 743.8
HCH3g1263 . 10 477 MLO family AT3G45290 56.9 2.0e-143 506.1
HCH12g1081 . 9 552 MLO family AT1G26700 69.6 2.4e-211 731.9
HCH13g0796 . 9 552 MLO family AT1G26700 69.9 1.2e-210 729.6
HCH1g0661 . 6 566 MLO family AT2G39200 64.2 5.2e-201 697.6
HCH3g1261 . 8 505 MLO family AT2G39200 65.9 4.1e-190 661.4
HCH2g1166 . 8 504 MLO family AT2G39200 67.2 3.0e-188 655.2
HCH14g0949 . 10 431 MLO family AT2G39200 50.1 7.2e-126 448.0
HCH3g1261 . 8 411 MLO family AT1G61560 68.0 9.4e-160 560.1
HCH1g0661 . 6 404 MLO family AT1G61560 68.4 2.7e-159 558.5
HCH2g1166 . 8 415 MLO family AT1G61560 66.3 2.2e-156 548.9
HCH14g0721 . 29 420 MLO family AT1G61560 51.5 5.9e-114 407.9
HCH4g0860 . 12 411 MLO family AT1G61560 50.2 2.6e-109 392.5
HCH14g0721 . 17 488 MLO family AT2G17430 64.5 6.2e-172 600.9
HCH13g1293 . 32 491 MLO family AT2G17430 62.8 1.4e-160 563.1
HCH4g0860 . 12 471 MLO family AT2G17430 59.9 2.7e-151 532.3
HCH14g0721 . 29 565 MLO family AT2G17480 65.3 3.3e-198 688.3
HCH13g1293 . 31 586 MLO family AT2G17480 59.4 6.6e-175 610.9
HCH4g0860 . 12 474 MLO family AT2G17480 63.5 2.9e-162 568.9
HCH3g1261 . 8 452 MLO family AT2G17480 53.3 2.5e-126 449.5
HCH2g1166 . 8 462 MLO family AT2G17480 51.0 5.3e-124 441.8
HCH4g0860 . 1 376 MLO family AT1G42560 63.9 1.1e-130 463.4
HCH14g0721 . 29 384 MLO family AT1G42560 59.6 9.6e-119 423.7
HCH13g1293 . 31 388 MLO family AT1G42560 56.5 1.3e-112 403.3
HCH2g0293 . 12 426 MLO family AT4G24250 55.1 7.5e-122 434.1
HCH6g1335 . 1 417 MLO family AT4G24250 53.8 8.9e-115 410.6
HCH14g0721 . 7 384 MLO family AT5G65970 66.4 1.2e-145 513.5
HCH13g1293 . 32 388 MLO family AT5G65970 65.8 1.4e-135 479.9
HCH4g0860 . 2 376 MLO family AT5G65970 60.1 1.8e-122 436.4
HCH2g1166 . 2 380 MLO family AT5G65970 51.7 4.9e-104 375.2
HCH3g1261 . 2 376 MLO family AT5G65970 50.7 1.0e-101 367.5
HCH4g0860 . 12 541 MLO family AT2G33670 61.9 3.5e-177 618.2
HCH14g0721 . 29 468 MLO family AT2G33670 62.5 1.5e-156 549.7
HCH13g1293 . 31 471 MLO family AT2G33670 57.8 1.7e-139 493.0
HCH1g0661 . 63 566 MLO family AT1G11310 61.9 7.4e-175 610.5
HCH3g1261 . 63 515 MLO family AT1G11310 63.8 2.2e-166 582.4
HCH2g1166 . 63 519 MLO family AT1G11310 63.1 6.5e-163 570.9
HCH6g1335 . 1 514 MLO family AT2G44110 58.4 1.5e-164 576.2
HCH6g1335 . 1 495 MLO family AT4G02600 73.3 8.4e-214 740.0
HCH2g0293 . 19 482 MLO family AT4G02600 51.1 4.7e-132 468.4
HCH11g0841 . 5 563 MLO family AT1G11000 68.3 1.6e-213 739.2
HCH13g1347 . 1 450 MLO family AT1G11000 54.9 1.0e-132 470.7
HCH6g1335 . 1 495 MLO family AT4G02600 73.3 8.4e-214 740.0
HCH2g0293 . 19 482 MLO family AT4G02600 51.1 4.7e-132 468.4
HCH1g0661 . 63 566 MLO family AT1G11310 61.9 7.4e-175 610.5
HCH3g1261 . 63 515 MLO family AT1G11310 63.8 2.2e-166 582.4
HCH2g1166 . 63 519 MLO family AT1G11310 63.1 6.5e-163 570.9
HCH3g1263 . 10 477 MLO family AT3G45290 56.9 2.0e-143 506.1
HCH11g0841 . 5 563 MLO family AT1G11000 68.3 1.6e-213 739.2
HCH13g1347 . 1 450 MLO family AT1G11000 54.9 1.0e-132 470.7
HCH4g0860 . 12 541 MLO family AT2G33670 61.9 3.5e-177 618.2
HCH14g0721 . 29 468 MLO family AT2G33670 62.5 1.5e-156 549.7
HCH13g1293 . 31 471 MLO family AT2G33670 57.8 1.7e-139 493.0
HCH3g1261 . 8 411 MLO family AT1G61560 68.0 9.4e-160 560.1
HCH1g0661 . 6 404 MLO family AT1G61560 68.4 2.7e-159 558.5
HCH2g1166 . 8 415 MLO family AT1G61560 66.3 2.2e-156 548.9
HCH14g0721 . 29 420 MLO family AT1G61560 51.5 5.9e-114 407.9
HCH4g0860 . 12 411 MLO family AT1G61560 50.2 2.6e-109 392.5
HCH14g0721 . 17 488 MLO family AT2G17430 64.5 6.2e-172 600.9
HCH13g1293 . 32 491 MLO family AT2G17430 62.8 1.4e-160 563.1
HCH4g0860 . 12 471 MLO family AT2G17430 59.9 2.7e-151 532.3
HCH14g0721 . 29 565 MLO family AT2G17480 65.3 3.3e-198 688.3
HCH13g1293 . 31 586 MLO family AT2G17480 59.4 6.6e-175 610.9
HCH4g0860 . 12 474 MLO family AT2G17480 63.5 2.9e-162 568.9
HCH3g1261 . 8 452 MLO family AT2G17480 53.3 2.5e-126 449.5
HCH2g1166 . 8 462 MLO family AT2G17480 51.0 5.3e-124 441.8
HCH4g0860 . 1 376 MLO family AT1G42560 63.9 1.1e-130 463.4
HCH14g0721 . 29 384 MLO family AT1G42560 59.6 9.6e-119 423.7
HCH13g1293 . 31 388 MLO family AT1G42560 56.5 1.3e-112 403.3
HCH14g0721 . 7 384 MLO family AT5G65970 66.4 1.2e-145 513.5
HCH13g1293 . 32 388 MLO family AT5G65970 65.8 1.4e-135 479.9
HCH4g0860 . 2 376 MLO family AT5G65970 60.1 1.8e-122 436.4
HCH2g1166 . 2 380 MLO family AT5G65970 51.7 4.9e-104 375.2
HCH3g1261 . 2 376 MLO family AT5G65970 50.7 1.0e-101 367.5
HCH12g1081 . 9 552 MLO family AT5G53760 70.3 4.7e-218 754.2
HCH13g0796 . 4 549 MLO family AT5G53760 70.2 6.3e-215 743.8
HCH1g0661 . 6 566 MLO family AT2G39200 64.2 5.2e-201 697.6
HCH3g1261 . 8 505 MLO family AT2G39200 65.9 4.1e-190 661.4
HCH2g1166 . 8 504 MLO family AT2G39200 67.2 3.0e-188 655.2
HCH14g0949 . 10 431 MLO family AT2G39200 50.1 7.2e-126 448.0
HCH2g0293 . 12 426 MLO family AT4G24250 55.1 7.5e-122 434.1
HCH6g1335 . 1 417 MLO family AT4G24250 53.8 8.9e-115 410.6
HCH12g1081 . 9 552 MLO family AT1G26700 69.6 2.4e-211 731.9
HCH13g0796 . 9 552 MLO family AT1G26700 69.9 1.2e-210 729.6
HCH6g1335 . 1 514 MLO family AT2G44110 58.4 1.5e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000916 3 4 3 1 3 3 3 2 3 2 4 3 3 3 2 3 3 6 3 2 2 2 1 2 2 2 3 6 5 2 86