Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1335 ATGGCAGGTGGAGGTGAAGGGACAACCTTAGAGTTCACTCCGACGTGGGTTGTGGCTGCTGTTTGCACGGTCATCGTCGCCATTTCTCTTGCTTTAGAACGTCTTCTTCACGTCCTCGGTACATACCTCAAGAAGAAGAATCAAAAGCCTCTCAATGAAGCTTTACAGAAAGTTAAAGAAGAATTGATGCTTTTGGGGTTTATTTCACTTCTTCTCACTGTATTTCAAGGCGCTATCTCCAAATTTTGTGTTCCTGAGAGTTTGACTTTGCATTTTCTTCCTTGCGATCTGAAAGATAAACCTAAAGAGGAACATGATTCTTCTTCTTCCAATTCGTCAACGACAGAACATTTTCAAACTTTCTTTGCTTCAAGTATTTCTGGTACTGCTAGGCGCCTTTTGTCTGAGGGATCAGCATCTCAGATTGGATATTGTGCTAAAAAGGATAAGGTGCCATTACTATCACTTGAAGCATTGCATCATCTACATATCTTTATCTTCATCCTAGCTATTGTCCACGTGACATTTTGCGTTCTCACCGTAGTTTTTGGAGGACTTAAGATTCGTCAGTGGAAGCATTGGGAGGATTCTATTGCAAAGGAGAATTATGATACACAACAGGTTTTGGGACCAAAAGTCACCCATGTCCATCAACATGCTTTTATCAAGGATCATTTTTTGGGCATTGGTAAAGATTCAGCTCTTCTCGGTTGGTTGCATTCCTTTCTTAAGCAGTTTTATGCTTCTGTAACAAAATCAGATTATGCAACATTACGTCTCGGTTTCATTATGACTCACTGTCGGGGGAACCCCAAGTTTAATTTTCACAAATACATGATACGTGCGCTTGAAGATGATTTCAAGCATGTTGTTGGTATCAGTTGGTATCTTTGGATCTTCGTGGTTGTCTTCTTGTTCCTTAACGTAAATGGTTGGCATACATATTTCTGGATAGCATTTATTCCTTTCCTTCTTCTGCTTGCCGTGGGAACCAAGCTGGAACATGTGATAACACAATTGGCGCACGAGGTTGCAGAGAAGCATATAGCAATTGAAGGTGAACTAGTTGTGCAACCATCCGACGATCACTTTTGGTTTCAGGCGCCCCGTTTGATTCTCTTCTTGATCCACTTTATACTTTTCCAAAACGCTTTTGAGATTGGATTTTTCTTCTGGATATGGGTTCAATATGGCTTTGACTCCTGCATCATGGGGAAAGTCCGCTATATAGTTCCCAGGCTTATTATTGGGGTTTTTGTTCAGGTGCTTTGCAGTTACAGTACGCTACCGCTCTACGCCATTGTCACACAGATGGGAACTTCTTTCAAGAAAGCAATCTTTGATGAACATGTACAAGTAGGCCTAGTTGGTTGGGCTCAAAAGGTGAAGAAAAAGAAGGGACTGAGATTAGCTGCTGATGGCTCTAATCAAGGGAGCAAGGAAGGTAGTTCTACTGTGGGGATTCAGCTGGGAAATGTCATGCGCAAAGCATCGATACCCGAGGAGGTTCAGCCGATGGCTCCTTCGGCTCCGAGTAATCATTCTTAG 1548 42.25 MAGGGEGTTLEFTPTWVVAAVCTVIVAISLALERLLHVLGTYLKKKNQKPLNEALQKVKEELMLLGFISLLLTVFQGAISKFCVPESLTLHFLPCDLKDKPKEEHDSSSSNSSTTEHFQTFFASSISGTARRLLSEGSASQIGYCAKKDKVPLLSLEALHHLHIFIFILAIVHVTFCVLTVVFGGLKIRQWKHWEDSIAKENYDTQQVLGPKVTHVHQHAFIKDHFLGIGKDSALLGWLHSFLKQFYASVTKSDYATLRLGFIMTHCRGNPKFNFHKYMIRALEDDFKHVVGISWYLWIFVVVFLFLNVNGWHTYFWIAFIPFLLLLAVGTKLEHVITQLAHEVAEKHIAIEGELVVQPSDDHFWFQAPRLILFLIHFILFQNAFEIGFFFWIWVQYGFDSCIMGKVRYIVPRLIIGVFVQVLCSYSTLPLYAIVTQMGTSFKKAIFDEHVQVGLVGWAQKVKKKKGLRLAADGSNQGSKEGSSTVGIQLGNVMRKASIPEEVQPMAPSAPSNHS 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47461147 47466162 + evm.model.ptg000003l.457 HCH6g1335 546829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1335 515 PANTHER MLO-LIKE PROTEIN 1 2 484 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH6g1335 515 Pfam Mlo family 8 485 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH6g1335 515 MobiDBLite consensus disorder prediction 496 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0293 HCH-Chr2:41922003 HCH6g1335 HCH-Chr6:47461147 2.10E-132 dispersed
HCH4g0860 HCH-Chr4:5508344 HCH6g1335 HCH-Chr6:47461147 9.50E-104 dispersed
HCH6g1335 HCH-Chr6:47461147 HCH2g1166 HCH-Chr2:54237510 2.50E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1335 K08472 - csv:101211868 900.968