Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1344 ATGGAAAGAAACGTTCTAATGATGGAAGAATCAAGAAAATGGATTGTATTGGTAGCAGCAATATGGATTCAAGCATTCACAGGAACCAATTTCGACTTCTCCTCGTATTCTTCGAATCTAAAAGCGGTTCTTGGAATGTCTCAGGTCCAGCTCAACTATTTGTCGGTTGCTTCCGACATGGGTAAGACCCTTGGCTGGTGCTCTGGCCTCTTGCTTCTTTATCTCCCTTTGTGGGTCGTTTTGCTTTTGGCAGCTTTCATGGGCTTTCTTGGTTATGGTCTTCAATGGCTTCTCTTTCTAAGAATTATCTCTCTTCCTTACTTCCTGGTGTATCTACTTTGCTTCTTTGCTGGATGTAGTATCTGCTGGTTCAACACTGTCTGCTATGTCTCCTGCATTCGAAATTTCCAAACCAACCGTTCGCTTGCGCTATCCTTGATAGTCAGCTTCAATGGTGTTAGTGCAGCTCTATACACCCTAATTGCCAATGCAATAGACCCCAACGATGATGGCTTCTACCTCTTCCTAAATGCACTAGTTCCTCTTATCATCTCTGGCCTTGTACTCCTCCCTATCCTTCACCAGCCTCCGGTTCAGCCGATCTCTGCTGATGCCTCTCGCCACGACTCGCTCATGTTCCTGTGCCTATATATCACAGCTTTTATCACAGGCCTATACCTACTATTCTTCAATTCAATGCCTACTAACAGATCAAGGGCCTATATTATGTTTTCAGGGGCTGTTGTTCTTTTATTACTTCCTTTGTGTTTGCCAGGAATCCTATGCTCGCGCAAGCGGGTGCGTCAAATCATATCCACTGGCTTGATATGGTTTGATAACTCTAGCTTTAGACTTGTTGATCCCGAGCTTCATCAGGAGCTCATCAATATCGAAACAGAAAAAGATTGCACGAAAGACATCACTTTTGATATTGAAGAGAAGCAGAGCATTTTAAGGAAGGTGGTGGAGAAAGAGAGCTTGGTAGCACTCAATGAAGAGCATCCTGCGAAGTTGCTCTTGCGTCGGTGGGACTTTTGGCTCTATTACATCGCATACTTCTGTGGAGGAACAATTGGGTTGGTTTATAGCAACAATTTAGGCCAGATTTCAGAGTCGTTGGGATATGGTTCATTAACTAGTTCACTCGTTACACTATACTCTTCTTGCTCCTTCTTTGGCAGGCTACTTTCAGCAGCCCCAGATTTTATGCGTGAGAAGGTGTACTTTGCAAGAACTGGGTGGATGGCTATTGCTCTTGTACCGACACCAATTGCCTTCATTTTACTCGCTGCATCAGGCAGCGAGATCGCATTGCAAGTGGGCACAGGCTTGATCGGCCTAAGCTCCGGAATCATATTTTCATCATCTGTATCAATCACATCAGAGTTATTCGGACCCAACAGCGCCGGGGTCAACCACAACATCCTCATCACCAACATCCCCCTCGGATCACTGCTCTATGGCCTCCTGGCAGCTATGGCATACGACTCAAGCGCAGAAACTTCGCAACAGGCGGCGGCGACATTGCTAGCAGATGCTGTGGTGTGTATGGGTCAGAAATGCTATCTGTCGACGTTTATATGGTGGGCGTGCATCTCCTTGGTCGGCCTTGCTTCTAGCTTCTTGCTTTTCCGACGTACTAAACCGGCTTACGACCGCCTCCTGGAGAGTAATCTAAGTAGGGTGCAATCATTTTAG 1698 46.0 MERNVLMMEESRKWIVLVAAIWIQAFTGTNFDFSSYSSNLKAVLGMSQVQLNYLSVASDMGKTLGWCSGLLLLYLPLWVVLLLAAFMGFLGYGLQWLLFLRIISLPYFLVYLLCFFAGCSICWFNTVCYVSCIRNFQTNRSLALSLIVSFNGVSAALYTLIANAIDPNDDGFYLFLNALVPLIISGLVLLPILHQPPVQPISADASRHDSLMFLCLYITAFITGLYLLFFNSMPTNRSRAYIMFSGAVVLLLLPLCLPGILCSRKRVRQIISTGLIWFDNSSFRLVDPELHQELINIETEKDCTKDITFDIEEKQSILRKVVEKESLVALNEEHPAKLLLRRWDFWLYYIAYFCGGTIGLVYSNNLGQISESLGYGSLTSSLVTLYSSCSFFGRLLSAAPDFMREKVYFARTGWMAIALVPTPIAFILLAASGSEIALQVGTGLIGLSSGIIFSSSVSITSELFGPNSAGVNHNILITNIPLGSLLYGLLAAMAYDSSAETSQQAAATLLADAVVCMGQKCYLSTFIWWACISLVGLASSFLLFRRTKPAYDRLLESNLSRVQSF 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47509233 47511948 + evm.model.ptg000003l.448 HCH6g1344 546838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1344 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 551 - GO:0016020(PANTHER)
HCH6g1344 565 Pfam Nodulin-like 13 258 IPR010658 -
HCH6g1344 565 SUPERFAMILY MFS general substrate transporter 313 549 IPR036259 -
HCH6g1344 565 Gene3D MFS general substrate transporter like domains 311 540 IPR036259 -
HCH6g1344 565 SUPERFAMILY MFS general substrate transporter 8 277 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1301 HCH-Chr6:47192178 HCH6g1344 HCH-Chr6:47509233 6.00E-165 dispersed
HCH6g1344 HCH-Chr6:47509233 HCH7g0478 HCH-Chr7:3626169 2.50E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1344 - - - 0.0