Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1352 ATGGCTGCTTTAAACTTGGGCTCAGCCTCTCACTTCGTCGACCAACTTCAACAAAACCAACAACGCTCCGACCTTCACTTGGAATCGCCACCTCGAGATTCCGATCATGTCACCCACTTTAACCCTAGCTCTGGCAGTGACGTCATGGTCCGCCGTCCAAGAGGTAGACCGTCCGGTTCGAAAAATAAACCAAAACCACCGGTTATCATCGCCCGGGAAAGTGCTAATACCCTAAGAGCTCATATCTTAGAAGTCAGTGGCGGATGCGACGTCTTCGAGGCGGTGGCGACTTATGCACGACAACGTCAACGTGGGATCTGTGTTTTGAACGGAAGCGGCATAGTTAATAACGTCAGCTTACGGCAGCCGGCGGCGGCGGGGTCCGTTTTGACGTTACAAGGGAGGTTTGAGATATTGTCTTTGACGGGATCTTTTTTGCCGCCTCCTGCGCCGCCGGGAGCTACTAGTTTGACGATTTTCTTGGCTGGTGGACAAGGGCAGGTGGTGGGAGGGAACGTGGTCGGAGCTTTGATTGCGTCGGGACCGGTAATTGTTATAGCTTCATCGTTTAGTAATGTTGCGTATGAGAGGTTGCCATTAGAAGAAGAGGAATTGCCAATGCCGCAAGACGGCGGCGGCGGTGGTGATAGCCATAACCCGTTTCAGGACGCGGGTTCTGGCGGGTTGCCGTTCCTTAATTTGCCGGTGAATATGGGGAATCCGAATCAATTATTCGGTTGA 741 52.5 MAALNLGSASHFVDQLQQNQQRSDLHLESPPRDSDHVTHFNPSSGSDVMVRRPRGRPSGSKNKPKPPVIIARESANTLRAHILEVSGGCDVFEAVATYARQRQRGICVLNGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLTGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLEEEELPMPQDGGGGGDSHNPFQDAGSGGLPFLNLPVNMGNPNQLFG 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47549431 47550171 + evm.model.ptg000003l.440 HCH6g1352 546846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1352 246 CDD DUF296 79 162 IPR005175 -
HCH6g1352 246 MobiDBLite consensus disorder prediction 204 224 - -
HCH6g1352 246 Gene3D - 78 207 - -
HCH6g1352 246 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
HCH6g1352 246 FunFam AT-hook motif nuclear-localized protein 78 205 - -
HCH6g1352 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 191 IPR005175 -
HCH6g1352 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 209 - -
HCH6g1352 246 PIRSF ESCAROLA 3 231 IPR014476 GO:0003680(InterPro)
HCH6g1352 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 214 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH6g1352 246 MobiDBLite consensus disorder prediction 19 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1352 HCH-Chr6:47549431 HCH7g1551 HCH-Chr7:47972397 1.80E-62 dispersed
HCH5g0280 HCH-Chr5:1673266 HCH6g1352 HCH-Chr6:47549431 2.80E-72 wgd
HCH6g1107 HCH-Chr6:45680408 HCH6g1352 HCH-Chr6:47549431 1.30E-72 wgd
HCH6g1352 HCH-Chr6:47549431 HCH7g1504 HCH-Chr7:47619708 2.10E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1352 - - - 0.0