Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1377 ATGGAAGTAAAAAAACCAGATTCCGATCACGTAATCCTCACCATCGATCACAAACAATCTCCAGAACAAATCTCTCAAATCCCATCCAAAACCAAAACTCTCCGCCGTCTCACTTTCTCTAAACCCAAATCCCGTTTCGAAGAAATCAACTACCCTTTCCCTCCCCCTAAATCCATTCCTGAATCCACAGAACTCCAAGACACTTCCTCCTCCTCCTCCTCCTCTTCCTCCGAATACGAATACGAATCCGACGAAAACGAAAGAGAAAGAGAAGGAAAATCACACCGACGCCGGAGAAAACCCAAAAGAAAACTCAACAAAAGAGCATTAATCGAATGGATCATGTTTCTCACCATCATAACATGCTTGATTTGCTCTCTAACCCTAAAATCCCTCCAAAACAAACAAATACTAAATCTCGAGCTCTGGAAATGGTGTTTAATCGTAATGGTTGTTTTCTGTGGCCGTCTGGTTTCCGGTTGGCTCGTAAGCTTAATCGTCTTCTTCGTCGAACGAAACTTCATGCTTCGTGAAAGAGTTTTATATTTCGTTTACGGCCTTCGTAAAAGCTTCCAAAACTGCGCTTGGCTAGCGCTTGTATTAATCGCATGGATGATAATGTTTCCCGACGTTCATAACAAAAACAAAGCCCTCATGAAAATATTCCGTTTCTTAATCGCTGTATTGATCGGAGCTACTATCTGGTTACTTAAAATCCTCCTCGTTAAAGTTTTAGCTTCTTCTTTCCACGTAGCGACGTTTTTTGATAGAATGAAGGAAAGTGTTTTCAATCATTATATATTGGAGACGTTATCTGGATTGCCGTTGGATGAAGATGAGAGAGATAAAGGTGTTGAATGTCGACGGTTGAAAATGTCGAAGTCGATGCCGGCGAGGCTGTCGAGATCGAAGAAGGAATCGATGACGGCGACGACGATAACGAGTAAGAGAATTGATATGGAGAGGCTGAGGAAGTTGAGTATGGAAGGGAGGCCGTCGGCGTGGAGTGTGAAGAGATTGGTGAGTTATGTCAGGTCGTCGGGATTGTCGACGATTTCAAGAACGGTGGATGATTTTTCTAACGCCGAATCGGAGATTACCAGTGAATGGGAAGCTAGGAATTGTGCTCATAGAGTTTTCAAGAATGTTGCTAAGCCTCATGCCAGATATATTGAAGAGGAAGATCTATTGAGGTTCTTGAAAATAGAAGAAGTCAACACCATTTTTCCTCTATTTGAAGGAGCCATTGAGACTGGAAAAATCACAAAATCTGCCTTCAGAAATTGGGTGGTTCATGCCTATATTGAACGAAAAGCATTGGCGCACTCTCTCAACGACACCAAGACCGCCGTCCAGCAGCTGCACAAACTCGCCAGCGCCGTCGTGATTGTGATCATTATTGTCATTTCCCTTTTAGTATTAGGCGTCGCCACCACTAAGGTCATCTTCGTCGTTACCTCTCAGCTCCTTCTCGTCGGCTTCATGTTCCAAAACACATGCAAAACCATGTTCGAATCCATCATCTTCGTCTTCGTCATGCATCCTTTTGACGTCGGTGATCGCTGTGTCGTCGACGGTGTCCATATGATAGTTGAAGAGATGAACATTTTGTCGACAGTATTCTTGAGATACGACAATGAGAAGATTTATTATCCAAATTCAGTTCTTCTTACAAAGCCGATAAGTAACTTCAAAAGAAGTCCAGACATGTCGGATACAGTTGATTTCAACATTGATGTTTCCACTTCTTTTGACAATATCACAGCCCTCAAGAAGGCCGTACAATTGTACATAGAGAGCAAACCAAAGCATTGGAGCCCAAAACATTCATTGGTAGTGAAAGAGATTGAGAATGTAGACAAAATGAAGATGAGTTTATGTGTGCAACACACAATGAACCATCAAAACTTTCCAGAAAGAAACAGCAGAAGATCAGAACTTATTTTTGAACTTAAAAGAGTTTTTGAGAATCTGGGTATTAAATATCATCTTCTTCCTCAAGAAGTTGTTGTCACTCAGTTCAGTTTAAGCAATGGGAGAATGGTGATTCCTCCCTCTTCATGA 2064 41.86 MEVKKPDSDHVILTIDHKQSPEQISQIPSKTKTLRRLTFSKPKSRFEEINYPFPPPKSIPESTELQDTSSSSSSSSSEYEYESDENEREREGKSHRRRRKPKRKLNKRALIEWIMFLTIITCLICSLTLKSLQNKQILNLELWKWCLIVMVVFCGRLVSGWLVSLIVFFVERNFMLRERVLYFVYGLRKSFQNCAWLALVLIAWMIMFPDVHNKNKALMKIFRFLIAVLIGATIWLLKILLVKVLASSFHVATFFDRMKESVFNHYILETLSGLPLDEDERDKGVECRRLKMSKSMPARLSRSKKESMTATTITSKRIDMERLRKLSMEGRPSAWSVKRLVSYVRSSGLSTISRTVDDFSNAESEITSEWEARNCAHRVFKNVAKPHARYIEEEDLLRFLKIEEVNTIFPLFEGAIETGKITKSAFRNWVVHAYIERKALAHSLNDTKTAVQQLHKLASAVVIVIIIVISLLVLGVATTKVIFVVTSQLLLVGFMFQNTCKTMFESIIFVFVMHPFDVGDRCVVDGVHMIVEEMNILSTVFLRYDNEKIYYPNSVLLTKPISNFKRSPDMSDTVDFNIDVSTSFDNITALKKAVQLYIESKPKHWSPKHSLVVKEIENVDKMKMSLCVQHTMNHQNFPERNSRRSELIFELKRVFENLGIKYHLLPQEVVVTQFSLSNGRMVIPPSS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47698743 47704523 - evm.model.ptg000003l.415 HCH6g1377 546871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1377 687 MobiDBLite consensus disorder prediction 1 16 - -
HCH6g1377 687 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 674 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
HCH6g1377 687 MobiDBLite consensus disorder prediction 18 35 - -
HCH6g1377 687 FunFam Predicted mechanosensitive ion channel 515 564 - -
HCH6g1377 687 SUPERFAMILY Sm-like ribonucleoproteins 505 564 IPR010920 -
HCH6g1377 687 Pfam Mechanosensitive ion channel, beta-domain 508 566 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g1377 687 PIRSF Memb_At2g17000 16 682 IPR016688 -
HCH6g1377 687 MobiDBLite consensus disorder prediction 1 100 - -
HCH6g1377 687 Gene3D - 515 564 IPR023408 -
HCH6g1377 687 MobiDBLite consensus disorder prediction 61 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0472 HCH-Chr12:2773254 HCH6g1377 HCH-Chr6:47698743 6.60E-148 dispersed
HCH6g1377 HCH-Chr6:47698743 HCH7g0440 HCH-Chr7:3258243 7.70E-135 dispersed
HCH6g1377 HCH-Chr6:47698743 HCH8g0615 HCH-Chr8:42947174 5.60E-178 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1377 K22048 - csv:101206752 1045.8