Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1379 ATGGGTTCCATCGGAATCCAAAATCCAAATCCATCTCCACCCTTCTACCCCTTCATGGATTGCTCTCGCCAAATCTGCAGCGCCTTCTGCCCACAATTCTGCCCCGTCATCATACTCTCGCCGCCGCCGCCGCTTTTCGGCCTCGACGACACCATCAGTTCCGGAACCTATTTCTCTCCTCTCATAGTAGCCATAATCGGGATCCTTGCTAGCGCTTTTATTCTAATCACTTACTACGCCCTCGTCTCCAAATATTGCCGCCGCAGAACCGACGCCGACGAGAGCTTTGAAAACGATAGAAATATTAACGAAACACGGCAATCTAGTTCTTCTCCGGGGCTTGATGAAGCGATGATAAAGTCTATATCTGTTTATAAGTATGAGAAAGGTGATGGATTAGTTAAAGGGAAAGACTGCTCCGTTTGTTTAAGTGAATTCGAAGAAAACGAAAGTTTGAGATTATTGCCGAAATGCAACCACGCTTTCCATATTGAGTGCATCGATACTTGGTTGAAATCGAATTCGAGTTGCCCAGTTTGTCGGTGTAATATTATTACGAATCCGGCAAGTCGTGAGATTGACGAGCAGCCGGTTGCGACGGCGCTAGAGTACCAGCGTGGCGGTGGTGATAGTGTTGTGGTGGTGGTGGTTGAAGATTTGTGTGACGATGTAAGGGAAGAGGCAGTGGTTGTGGAAATTGTTGGCAATGGATCTCCAATGAATGGAGATGAAGATGGCGGCGAGGAAGCGGTGGAAGCGGCGGCGGATGGAACTGAAAGTTCTAATGGAGAAGGGAAATGGAGAAATAGAAACGGGGTTTTGAATTTGGCGATAGGGAAATCGATTTCTTCTGGGATTTCTATGTTGTCGAGTTGA 876 47.26 MGSIGIQNPNPSPPFYPFMDCSRQICSAFCPQFCPVIILSPPPPLFGLDDTISSGTYFSPLIVAIIGILASAFILITYYALVSKYCRRRTDADESFENDRNINETRQSSSSPGLDEAMIKSISVYKYEKGDGLVKGKDCSVCLSEFEENESLRLLPKCNHAFHIECIDTWLKSNSSCPVCRCNIITNPASREIDEQPVATALEYQRGGGDSVVVVVVEDLCDDVREEAVVVEIVGNGSPMNGDEDGGEEAVEAAADGTESSNGEGKWRNRNGVLNLAIGKSISSGISMLSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47714426 47715428 + evm.model.ptg000003l.413 HCH6g1379 546873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1379 291 CDD RING-H2_EL5-like 138 181 - -
HCH6g1379 291 SUPERFAMILY RING/U-box 121 189 - -
HCH6g1379 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
HCH6g1379 291 PANTHER RING-H2 FINGER PROTEIN ATL16 42 250 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
HCH6g1379 291 FunFam RING-H2 finger protein ATL43 114 188 - -
HCH6g1379 291 SMART ring_2 139 180 IPR001841 -
HCH6g1379 291 Pfam Ring finger domain 138 181 IPR001841 -
HCH6g1379 291 MobiDBLite consensus disorder prediction 235 266 - -
HCH6g1379 291 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1362 HCH-Chr3:51339637 HCH6g1379 HCH-Chr6:47714426 3.10E-13 dispersed
HCH5g0264 HCH-Chr5:1551068 HCH6g1379 HCH-Chr6:47714426 1.50E-49 dispersed
HCH6g1379 HCH-Chr6:47714426 HCH7g1324 HCH-Chr7:46142543 6.80E-24 dispersed
HCH13g1327 HCH-Chr13:41192506 HCH6g1379 HCH-Chr6:47714426 3.60E-15 transposed
HCH6g1379 HCH-Chr6:47714426 HCH7g1461 HCH-Chr7:47254184 1.40E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1379 - - - 0.0