Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1409 ATGGCGGGCCTATCACTCAAATGTGGGGATTGTGGCGCTCTATTGAGATCTGTAGAAGAAGCTCAAGAACATGCTGAACTTACTTCTCACTCCAATTTCTCTGAATCTACTGAAGCCGTACTCAATCTCGTCTGCACTGATTGCGGCAAGCCGTGTCGATCCAAGACCGAAAGTGATCTACATACGAAAAGAACTGGTCATACTGAGTTTACTGATAGGACTTCAGAGGCTGCGAAACCGATAAGTTTGGAGGTTCCAAAGGTTGATGCGGAATCGGAGGATGCTGTTGATGCGGCCGGTTCGAGTCAGCCCGATGAAATGGTTGTGCCTGAGGTGGACAAGAATATACTCGAGGAACTTGAAAATATGGGTTTTCCGACAGCACGGGCAATCCGTGCACTTCACTATTCTGGTAATGCCAGTCTTGAGGCTGCTGTTAATTGGGTAGTTGAACATGAGAATGATCCAGATATTGATCAGATGCCTTTGGTACCTAAGAACACTAAGGTTGAGGCCCCAAAGCCTTCTCTTACGCCAGAAGAACTGAAAGCAAAACAACAGGATTTAAGGGAACGTGCTCGCAAGAAAAAAGAGGAGGAAGACAAAAAAACAGAGAGAGAAAAAGAAAAGGAGAGGGTTCGAATCGGCAAGGAGCTCTTAGAAGCAAAAAGAATTGAGGAACAAAATGAAAGAAAAAGAATACTAGCGCTGAGAAAAGCTGAAAAAGAGGAGGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCTGAAAGAAGGCGGCGGCTTGGATTGCCACCAGAGGATCCCTCAACTGCAAAACCGTCAACACCTGCCGTAGAAGAGAAAAAGAGCTCGTTGCCTGTTAGACCTGCTACAAAAGCAGAACAAATGAGAGAATGCTTGCGATCATTAAAGTCTAATCACAAGGATGATGATGCTAAAGTGAAGAGAGCATTTCAGACCCTTCTAACCTACATCGGAAACGTTGCCAAAAATCCCGATGAGGAGAAGTTCAGAAAAATTAGACTTACTAACCAAACTTTCCAGGAAAGAGTGGGTGCACTGAAAGGGGGAATTGAGTTTCTAGAGTTGTGCGGGTTTGAGAAAATTGAAGGTGGTGAATTCATTTTTCTGCCCAGGGACAAGGTTGACAGGGCAGTGCTGAATTCAGCTGGGTCTGAGCTGGACTCTGCAATAAAGAATCCCTTCTTTGGCGTTCTCTGA 1239 44.87 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLVCTDCGKPCRSKTESDLHTKRTGHTEFTDRTSEAAKPISLEVPKVDAESEDAVDAAGSSQPDEMVVPEVDKNILEELENMGFPTARAIRALHYSGNASLEAAVNWVVEHENDPDIDQMPLVPKNTKVEAPKPSLTPEELKAKQQDLRERARKKKEEEDKKTEREKEKERVRIGKELLEAKRIEEQNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPSTPAVEEKKSSLPVRPATKAEQMRECLRSLKSNHKDDDAKVKRAFQTLLTYIGNVAKNPDEEKFRKIRLTNQTFQERVGALKGGIEFLELCGFEKIEGGEFIFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47927966 47933672 - evm.model.ptg000003l.383 HCH6g1409 546903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1409 412 CDD PUB_UBA_plant 306 412 - -
HCH6g1409 412 CDD UBA_PUB_plant 111 159 - -
HCH6g1409 412 Gene3D - 113 159 - -
HCH6g1409 412 MobiDBLite consensus disorder prediction 156 214 - -
HCH6g1409 412 MobiDBLite consensus disorder prediction 253 299 - -
HCH6g1409 412 MobiDBLite consensus disorder prediction 176 214 - -
HCH6g1409 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
HCH6g1409 412 SMART PGNneu 322 385 - -
HCH6g1409 412 MobiDBLite consensus disorder prediction 53 72 - -
HCH6g1409 412 SUPERFAMILY PUG domain-like 296 408 IPR036339 -
HCH6g1409 412 Coils Coil 225 262 - -
HCH6g1409 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
HCH6g1409 412 Gene3D - 304 402 - -
HCH6g1409 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 111 152 IPR015940 -
HCH6g1409 412 Pfam PUB domain 319 390 IPR018997 -
HCH6g1409 412 Coils Coil 182 214 - -
HCH6g1409 412 MobiDBLite consensus disorder prediction 253 271 - -
HCH6g1409 412 PANTHER F13M7.16 PROTEIN 1 412 - -
HCH6g1409 412 SUPERFAMILY UBA-like 101 166 IPR009060 GO:0005515(InterPro)
HCH6g1409 412 Pfam UBA-like domain 113 160 IPR015940 -
HCH6g1409 412 SMART uba_6 113 151 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1352 HCH-Chr10:46058276 HCH6g1409 HCH-Chr6:47927966 3.50E-06 dispersed
HCH5g0194 HCH-Chr5:1086086 HCH6g1409 HCH-Chr6:47927966 1.30E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1409 K24348 - csv:101215434 660.603