Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1411 ATGGGTAAGGAAAAGGTTCATATCAACATTGTGGTTATTGGCCACGTCGACTCTGGAAAGTCGACCACCACTGGTCACCTTATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTACGCTTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACGGTCATTGATGCTCCCGGACATCGTGACTTTATTAAGAATATGATTACTGGAACATCACAGGCTGACTGTGCTGTTCTCATTATTGACTCCACAACTGGTGGTTTTGAAGCCGGTATCTCTAAGGATGGCCAGACCCGTGAACATGCTCTCCTTGCTTTTACCCTCGGTGTGAAGCAGATGATTTGCTGTTGTAACAAGATGGATGCCACTACTCCCAAGTACTCAAAGGCCAGGTATGATGAAATTATCAAGGAAGTTGCATCCTACCTAAAGAAGGTTGGATACAACCCTGACAAAATTCCATTTGTTCCCATCTCTGGGTTTGAGGGTGACAACATGATTGAGAGGTCTACTAATCTCGACTGGTACAAGGGCCCTACCCTCCTTGAAGCCCTTGATCAGATCTCAGAGCCCAAGAGACCTTCAGACAAGCCACTTCGTCTACCACTTCAGGATGTTTACAAGATTGGAGGTATCGGTACTGTTCCAGTGGGCCGAGTTGAAACTGGTGTCCTCAAGCCTGGAATGGTTGTTACCTTTGCACCAACTGGACTCTCCACTGAAGTTAAGTCTGTTGAAATGCACCATGAATCTCTTCCAGAGGCTCTCCCCGGTGACAATGTCGGTTTCAATGTGAAGAATGTTGCTGTTAAGGATCTCAAGCGAGGATTTGTTGCTTCTAACTCTAAGGATGATCCAGCCAAAGAGGCTGCTAACTTCACATCGCAGGTTATTATCATGAACCACCCCGGACAGATTGGTAATGGTTATGCTCCAGTTCTTGATTGTCACACCTCTCACATTGCCGTCAAGTTTGCTGAAATTCTTACCAAGATTGATCGTCGATCTGGTAAGGAACTCGAGAAGGAACCCAAGTTTTTGAAGAACGGTGATGCTGGAATGGTTAAGATGGTTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCTGAATACCCGCCAATGGGTCGTTTTGCAGTCAGGGACATGCGTCAAACGGTTGCTGTTGGTGTCATCAAGAGCGTGGAGAAAAAGGACCCAACTGGAGCCAAAGTCACCAAGTCCGCTGCCAAGAAGAAATAA 1344 46.65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVASYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLSTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPMGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAAKKK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47944001 47945937 + evm.model.ptg000003l.381 HCH6g1411 546905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1411 447 FunFam Elongation factor 1-alpha 323 430 - -
HCH6g1411 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 CDD EF1_alpha_III 323 426 - -
HCH6g1411 447 CDD EF1_alpha 9 227 - -
HCH6g1411 447 Gene3D Translation factors 323 430 - -
HCH6g1411 447 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
HCH6g1411 447 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
HCH6g1411 447 Gene3D - 1 226 IPR027417 -
HCH6g1411 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
HCH6g1411 447 FunFam Elongation factor 1-alpha 229 316 - -
HCH6g1411 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
HCH6g1411 447 Pfam Elongation factor Tu GTP binding domain 6 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g1411 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
HCH6g1411 447 CDD EF1_alpha_II 230 320 - -
HCH6g1411 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
HCH6g1411 447 FunFam Elongation factor 1-alpha 1 226 - -
HCH6g1411 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
HCH6g1411 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
HCH6g1411 447 Gene3D Translation factors 229 316 - -
HCH6g1411 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0416 HCH-Chr13:2860275 HCH6g1411 HCH-Chr6:47944001 7.70E-253 dispersed
HCH12g0311 HCH-Chr12:1766589 HCH6g1411 HCH-Chr6:47944001 1.30E-77 transposed
HCH13g0598 HCH-Chr13:4581108 HCH6g1411 HCH-Chr6:47944001 3.90E-55 transposed
HCH3g0198 HCH-Chr3:1253954 HCH6g1411 HCH-Chr6:47944001 4.00E-75 transposed
HCH6g1411 HCH-Chr6:47944001 HCH7g1431 HCH-Chr7:47027301 2.00E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1411 K03231 - vvi:100246711 878.241