Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1418 ATGGCATCAACTTCTCTTGGTAGTAGGAAGCCATTATTGCCAGTTATTGAAGCTTCTTCTAAATTTTTTGCATACCCACCACCACAAGCAAAGTATGAGGATATTGTAGCCAATCCTAAGCTCTTCATGGAAACTTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGAGGGAAAGAACTAGACCTGCATCGGCTTTTTGTCGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTGACTTGTGTGTTCAACTTTCCTTCAACGGCTACCAATGCATCTTTTGTGCTAAGGAAGTATTATATTTCCTTGCTTCATCATTTTGAGCAGATTTACTTCTTTAAAGCTTTGGCATGGAAACCAATGTCATCAGATTCTTCTCAGTGCCCGATGGCAGCGCCGACTTCCACGCAAGGGACACCGTCTATGTGGCCAGCATCAGATAATCAGGCAACCATGGCCCAGCAACTAAGAGTCACTGCTACAGAAGTTCCAGCAGTTGCACCGGGTTCGGCATCATCAGCACGGTTTCCAGTGATAGGAGTCATTGATGGAAAATTTGAAAGCGGGTATCTTGTTACTGTGACTGTAGGATCAGAGAAGCTTAAAGGTGTGCTTTATCAAGCTCCTCCAGAGCACCCTGCACAACTAGTGTCACGGCCTTGTAGTGTTTTTGCCAAAGATGCTGCTACCTCCTCGTTACCAAATATTCATCGCCGTCGACGGAGGAAGAAGTCCGAGATAAAAAGAAGGGACCCTGCTCATCCGAAACCGAACAGAAGCGGCTACAATTTCTTCTTTGCCGAGCAGCATGCTAGACTAAAACCATTGTACCCAGGGAAGGACAGAGAGATAAGTAGAATGATCGGTGAACTTTGGAATAAACTTAAAGACACTGAAAGAATAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATTGAGATGGAGGATTACAGAGAGAGGCTGAGGACAGGACAAGTCATCAGTGATGCAGTGCCATTACAACAACGTCATCCCGAGCCCGACCTGAATATGGTATATGCTGACAAAAATGAAGAAACCGAGGATGGCGATTCACCTCAAACCCCGGATAACGACACTAGTTACGTCGAAGGCGACTCTGGAGAATATAAAACTGAAGAGAAGGACTCAGAAGAAGATGCATCTCCACTAGGAGTTAGCAATGTGGATGTCAATGTTTTGGTGGAGGAGGAAGATGGCGAGATGGGAAATGCAGAACATGACATTAGACAGGAGGGGACTAGTATGGTTGTTGTTGACAAAGAAGTTCACTCTGCCAACTCCTTTATGGAGGAGGCTAAAGAAGAACCGGCAGCCATTAGAGAAGAGTAA 1407 44.42 MASTSLGSRKPLLPVIEASSKFFAYPPPQAKYEDIVANPKLFMETLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTCVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKALAWKPMSSDSSQCPMAAPTSTQGTPSMWPASDNQATMAQQLRVTATEVPAVAPGSASSARFPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPPEHPAQLVSRPCSVFAKDAATSSLPNIHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKDTERIVYQEKAMKDKERYRIEMEDYRERLRTGQVISDAVPLQQRHPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGDSGEYKTEEKDSEEDASPLGVSNVDVNVLVEEEDGEMGNAEHDIRQEGTSMVVVDKEVHSANSFMEEAKEEPAAIREE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47984744 47987389 - evm.model.ptg000003l.374 HCH6g1418 546912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1418 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 386 - -
HCH6g1418 468 Gene3D High mobility group box domain 254 349 IPR036910 -
HCH6g1418 468 MobiDBLite consensus disorder prediction 370 414 - -
HCH6g1418 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 270 337 IPR009071 -
HCH6g1418 468 Gene3D - 29 136 IPR036431 GO:0003677(InterPro)
HCH6g1418 468 FunFam High mobility group B protein 15 252 347 - -
HCH6g1418 468 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677(InterPro)
HCH6g1418 468 SMART bright_3 37 128 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 MobiDBLite consensus disorder prediction 247 276 - -
HCH6g1418 468 Coils Coil 319 339 - -
HCH6g1418 468 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677(InterPro)
HCH6g1418 468 SUPERFAMILY HMG-box 263 342 IPR036910 -
HCH6g1418 468 CDD HMG-box_AtHMGB9-like 270 336 - -
HCH6g1418 468 Pfam ARID/BRIGHT DNA binding domain 39 123 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 Pfam HMG (high mobility group) box 270 337 IPR009071 -
HCH6g1418 468 SMART ARID_2 33 123 - -
HCH6g1418 468 SMART hmgende2 269 338 IPR009071 -
HCH6g1418 468 MobiDBLite consensus disorder prediction 250 264 - -
HCH6g1418 468 MobiDBLite consensus disorder prediction 389 406 - -
HCH6g1418 468 FunFam High mobility group B protein 15 30 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1418 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0090 HCH-Chr12:482414 HCH6g1418 HCH-Chr6:47984744 3.00E-71 dispersed
HCH6g0920 HCH-Chr6:43953854 HCH6g1418 HCH-Chr6:47984744 3.60E-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33777 PF01388 ARID 2.80E-17 CL0123 HCH TR