Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1418 ATGGCATCAACTTCTCTTGGTAGTAGGAAGCCATTATTGCCAGTTATTGAAGCTTCTTCTAAATTTTTTGCATACCCACCACCACAAGCAAAGTATGAGGATATTGTAGCCAATCCTAAGCTCTTCATGGAAACTTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGAGGGAAAGAACTAGACCTGCATCGGCTTTTTGTCGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTGACTTGTGTGTTCAACTTTCCTTCAACGGCTACCAATGCATCTTTTGTGCTAAGGAAGTATTATATTTCCTTGCTTCATCATTTTGAGCAGATTTACTTCTTTAAAGCTTTGGCATGGAAACCAATGTCATCAGATTCTTCTCAGTGCCCGATGGCAGCGCCGACTTCCACGCAAGGGACACCGTCTATGTGGCCAGCATCAGATAATCAGGCAACCATGGCCCAGCAACTAAGAGTCACTGCTACAGAAGTTCCAGCAGTTGCACCGGGTTCGGCATCATCAGCACGGTTTCCAGTGATAGGAGTCATTGATGGAAAATTTGAAAGCGGGTATCTTGTTACTGTGACTGTAGGATCAGAGAAGCTTAAAGGTGTGCTTTATCAAGCTCCTCCAGAGCACCCTGCACAACTAGTGTCACGGCCTTGTAGTGTTTTTGCCAAAGATGCTGCTACCTCCTCGTTACCAAATATTCATCGCCGTCGACGGAGGAAGAAGTCCGAGATAAAAAGAAGGGACCCTGCTCATCCGAAACCGAACAGAAGCGGCTACAATTTCTTCTTTGCCGAGCAGCATGCTAGACTAAAACCATTGTACCCAGGGAAGGACAGAGAGATAAGTAGAATGATCGGTGAACTTTGGAATAAACTTAAAGACACTGAAAGAATAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATTGAGATGGAGGATTACAGAGAGAGGCTGAGGACAGGACAAGTCATCAGTGATGCAGTGCCATTACAACAACGTCATCCCGAGCCCGACCTGAATATGGTATATGCTGACAAAAATGAAGAAACCGAGGATGGCGATTCACCTCAAACCCCGGATAACGACACTAGTTACGTCGAAGGCGACTCTGGAGAATATAAAACTGAAGAGAAGGACTCAGAAGAAGATGCATCTCCACTAGGAGTTAGCAATGTGGATGTCAATGTTTTGGTGGAGGAGGAAGATGGCGAGATGGGAAATGCAGAACATGACATTAGACAGGAGGGGACTAGTATGGTTGTTGTTGACAAAGAAGTTCACTCTGCCAACTCCTTTATGGAGGAGGCTAAAGAAGAACCGGCAGCCATTAGAGAAGAGTAA 1407 44.42 MASTSLGSRKPLLPVIEASSKFFAYPPPQAKYEDIVANPKLFMETLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTCVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKALAWKPMSSDSSQCPMAAPTSTQGTPSMWPASDNQATMAQQLRVTATEVPAVAPGSASSARFPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPPEHPAQLVSRPCSVFAKDAATSSLPNIHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKDTERIVYQEKAMKDKERYRIEMEDYRERLRTGQVISDAVPLQQRHPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGDSGEYKTEEKDSEEDASPLGVSNVDVNVLVEEEDGEMGNAEHDIRQEGTSMVVVDKEVHSANSFMEEAKEEPAAIREE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47984744 47987389 - evm.model.ptg000003l.374 HCH6g1418 546912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1418 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 386 - -
HCH6g1418 468 Gene3D High mobility group box domain 254 349 IPR036910 -
HCH6g1418 468 MobiDBLite consensus disorder prediction 370 414 - -
HCH6g1418 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 270 337 IPR009071 -
HCH6g1418 468 Gene3D - 29 136 IPR036431 GO:0003677(InterPro)
HCH6g1418 468 FunFam High mobility group B protein 15 252 347 - -
HCH6g1418 468 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677(InterPro)
HCH6g1418 468 SMART bright_3 37 128 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 MobiDBLite consensus disorder prediction 247 276 - -
HCH6g1418 468 Coils Coil 319 339 - -
HCH6g1418 468 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677(InterPro)
HCH6g1418 468 SUPERFAMILY HMG-box 263 342 IPR036910 -
HCH6g1418 468 CDD HMG-box_AtHMGB9-like 270 336 - -
HCH6g1418 468 Pfam ARID/BRIGHT DNA binding domain 39 123 IPR001606 GO:0003677(InterPro)
HCH6g1418 468 Pfam HMG (high mobility group) box 270 337 IPR009071 -
HCH6g1418 468 SMART ARID_2 33 123 - -
HCH6g1418 468 SMART hmgende2 269 338 IPR009071 -
HCH6g1418 468 MobiDBLite consensus disorder prediction 250 264 - -
HCH6g1418 468 MobiDBLite consensus disorder prediction 389 406 - -
HCH6g1418 468 FunFam High mobility group B protein 15 30 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0090 HCH-Chr12:482414 HCH6g1418 HCH-Chr6:47984744 3.00E-71 dispersed
HCH6g0920 HCH-Chr6:43953854 HCH6g1418 HCH-Chr6:47984744 3.60E-77 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33777 PF01388 ARID 2.80E-17 CL0123 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1418 - - - 0.0