Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1420 ATGTGGTTTCTACGTTGGAATTATTTGTCATGCATTGGAATATTAGCAATAATCTTGCTAAGCAATGGAGTTATGAGAGAAGCAAAAGCTCAGATTTATAGATCTGTGGGGAAGAAGAAGCTTGCTTGGCACAAACTCACTGTTGATAAAAATGGCCATGGCAACTTCTCAACCATTCAAGCAGCCATTGATTCTGTCCCTTCAAACAATAAATATTGGGTTTCCATCCTCATCAATGCCGGTGTCTACAAAGAGAAGGTGACAATCCCATATGACAAGCCATATATCATCCTCAAAGGACAAGGGAAAAGAACCACAAGAGTTGTTTGGGATGACCATTTCTCAGTGGCACAAAGCCCTACTTTCACTTCTTCGGCAGATAATATTGTTGTCAAAAGCATGAGTTTTGTGAATTCGTATAATTATCCGTGGAAGAACGGTGGAAATCCGAGGAAGCCTGCGGTGGCAGCCATGATCGCCGGCGACAAGTCGACGTTCTATAAATGTGGTTTCTTTGGATTGCAAGATACGTTGTGGGATGTTCAAGGAAGACATTACTACCATCGCTGCACAATCCAAGGTGCTGTCGATTTTATATTTGGAAGTGGTCAATCCATTTTTGAGGGATGTGTGATATCAGTGGTTGGAAAAGCATTAGGGTTTGGTTTATCAGGGTACATAACAGCACAAGGAAGAAGCAACCCAAATGATGGAAATGGTTTTGTTTTCAAAGGTTGCAATGTGATTGGGAGTGGATCAGCCTTATTGGGAAGACCATGGAGAGGATTTTCAAGAGTCATTTTCTATTACTCTAACTTCTCCAATCTCATTCAACCTCTTGGTTGGGATCCTTGGCTTTTTGTTGGCCATGAGGATCAATTGACGTATGCGGAGTATGGTTGCTATGGACCAGGATCCGACATGTCACAACGAGTGAGTTGGGAAAAGAAGCTTAGTTACGAGTCACTACAACAATTAACTAGCCTAAGTTTTGTTGATAATGAAGGTTGGATACAACAACAACCATTCTAG 1032 41.47 MWFLRWNYLSCIGILAIILLSNGVMREAKAQIYRSVGKKKLAWHKLTVDKNGHGNFSTIQAAIDSVPSNNKYWVSILINAGVYKEKVTIPYDKPYIILKGQGKRTTRVVWDDHFSVAQSPTFTSSADNIVVKSMSFVNSYNYPWKNGGNPRKPAVAAMIAGDKSTFYKCGFFGLQDTLWDVQGRHYYHRCTIQGAVDFIFGSGQSIFEGCVISVVGKALGFGLSGYITAQGRSNPNDGNGFVFKGCNVIGSGSALLGRPWRGFSRVIFYYSNFSNLIQPLGWDPWLFVGHEDQLTYAEYGCYGPGSDMSQRVSWEKKLSYESLQQLTSLSFVDNEGWIQQQPF 343
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 48006595 48009895 - evm.model.ptg000003l.372 HCH6g1420 546914
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1420 343 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
HCH6g1420 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 340 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH6g1420 343 Pfam Pectinesterase 46 333 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH6g1420 343 SUPERFAMILY Pectin lyase-like 46 340 IPR011050 -
HCH6g1420 343 FunFam Pectinesterase 40 342 - -
HCH6g1420 343 Gene3D - 42 343 IPR012334 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0440 HCH-Chr6:12100569 HCH6g1420 HCH-Chr6:48006595 1.80E-72 dispersed
HCH6g1420 HCH-Chr6:48006595 HCH7g1024 HCH-Chr7:41808019 4.40E-62 dispersed
HCH6g1420 HCH-Chr6:48006595 HCH6g0417 HCH-Chr6:10080166 1.80E-87 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1420 - - - 0.0