Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1437 ATGGCGACGCTCAATAGATGGTCTTCTTCGTTATCTTTCATTTCCCTTGCATTGCTCTTCTTCTTCACCATCGCTTTTCTTCGCCAACACCACATCTCTCAATCCAGGGTGGAGCTCAAGAATGAGGCTGCAGTGGATAATCCTGATGAGATTGCTGCCTTGGTTGAAATGACCATCCGTAATAGCACTGAAAGAAGGAAGTTGGGATACTTCTCATGTGGAACTGGGAATCCAATTGATGACTGCTGGCGTTGTGACTCCAACTGGCACCGCAACCGTAAACGTCTTGCGCAATGCGGCATCGGGTTCGGCCGCAACGCTGTTGGGGGTCGTGACGGGCGTTTCTACGTCGTCACCGACTCGGGCGACGATGACCCTGTGAACCCGAAGCCGGGCACTCTTCGTCATGCTGTCATTCAAGACAAGCCTCTTTGGATTGTGTTCAAGAGAGACATGGTGATTCAGTTGAAACAGGAACTGATCATGAATAGTTTTAAGACAATTGATGCTCGTGGTGTCAATGTGCATATTGCGAATGGTGCTTGTATCACTATCCAGTTTGTGACTAATGTTATCATCCATGGTCTTCATATCCATGACTGCAAACCCACTGGCAATGCCATGGTGAGAAGCTCTCCTACTCATTTTGGGTGGAGGACTATGGCCGATGGTGACGCTATATCGATATTCGGGTCGAGCCATGTTTGGATTGATCACAATTCTCTCTCGAATTGTGCGGATGGTCTTGTTGATGCTGTCATGGGCTCAACAGCAATCACAATCTCTAACAACCACTTCACACATCACAATGAGGTTATGCTTTTAGGCCATAGTGATTCCTACACTAAGGATAAGCAAATGCAAGTAACAATTGCTTATAATCATTTTGGAGAGGGACTTATCCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCAATTGGTGGAAGTGCAAACCCCACCATCAACAGTCAGGGGAATAGATATGCTGCTCCAACCAACCCTTTTGCCAAGGAGGTTACGAAGAGAGTTGAAACAGCAGCGAGTGAGTGGAAGGGATGGAATTGGAGATCAGAAGGAGATATGATGCTGAATGGTGCTTATTTTACACCATCAGGAGCAGGGGCTTCAGCCAGCTACGCAAGAGCCTCAAGCTTAGGAGCCAAATCTGCTTCTATGGTTGCCTCCATCACATCTTCTGCTGGTTCACTCCCTTGTCGTAGAGGCCATCCCTGTTAG 1278 47.18 MATLNRWSSSLSFISLALLFFFTIAFLRQHHISQSRVELKNEAAVDNPDEIAALVEMTIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAQCGIGFGRNAVGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHVWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAASEWKGWNWRSEGDMMLNGAYFTPSGAGASASYARASSLGAKSASMVASITSSAGSLPCRRGHPC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48126885 48129237 + evm.model.ptg000003l.355 HCH6g1437 546931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
HCH6g1437 425 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
HCH6g1437 425 SMART amb_all 151 348 IPR002022 -
HCH6g1437 425 SUPERFAMILY Pectin lyase-like 53 419 IPR011050 -
HCH6g1437 425 PANTHER PECTATE LYASE 18-RELATED 19 422 IPR045032 GO:0030570(InterPro)
HCH6g1437 425 Gene3D - 76 418 IPR012334 -
HCH6g1437 425 Pfam Pectate lyase 163 340 IPR002022 -
HCH6g1437 425 FunFam Pectate lyase 76 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0276 HCH-Chr3:1761408 HCH6g1437 HCH-Chr6:48126885 1.50E-136 dispersed
HCH6g1437 HCH-Chr6:48126885 HCH9g0554 HCH-Chr9:3632306 7.10E-147 dispersed
HCH5g0167 HCH-Chr5:965687 HCH6g1437 HCH-Chr6:48126885 2.50E-208 wgd
HCH6g1437 HCH-Chr6:48126885 HCH7g1401 HCH-Chr7:46751094 7.40E-213 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1437 K01728 - csv:101217580 782.711