Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1444 ATGGCGGCTACGCCCTGCTCAGTCCAAGACTTAGCTCAGCTTCTCGGCCCCAACGTCACTAACTCACTCGCCGCCGCCTCCTACATCTGCAACCAATTCACCACCACCACCAACAACTATTCCGATACCAAATACGCCGTCGACACCGTCTACCTTCTCTTCTCCGCTTACCTCGTTTTCTCCATGCAACTCGGCTTCGCCATGTTATGTGCTGGTTCCGTACGTGCCAAGAACACCATGAATATAATGCTCACTAACGTTCTCGACGCCGCTGCCGGCGGCCTCTTTTACTATCTATTTGGTTTCGCTTTCGCTTTCGGTACCCCTTCTAATAGTTTCATCGGCCACCACTTCTTCGGCCTCAAATCTGTCCCTTCCACCGCTGCTGATTACAGCTTTTTTCTTTACCAATGGGCTTTCGCCATTGCCGCTGCCGGAATTACCAGCGGTTCTATTGCTGAACGAACCCAGTTTGTTGCTTATTTGATTTACTCTTCGGCTCTTACCGGTTTTGTCTATCCGGTCGTCTCTCATTGGTTCTGGTCTCCGGATGGTTGGGCCCACCCGGCTCGACAGGATGGAAATTTGTTGTTTGGATCCGGAGTTATCGATTTTGCCGGTTCAGGAGTCGTCCACATGGTTGGAGGTATAGCCGGTTTATGGGGTGCTTTAATTGAAGGACCAAGGATGGGCCGGTTCGACCGATCCGGCCGGTCCGTTGCGCTTCGTGGACATAGTGCTTCTCTCGTTGTTCTCGGAACTTTCATGCTTTGGTTTGGTTGGTACGGGTTCAACCCCGGTTCGTTTACTAAAATCCTTTCCCCTTACAATTCCGGAAGCTTCTACGGGCAGTGGAGCGCCGTCGGTCGAACCGCCGTGACTACCACCCTAGCCGGTTGCACCGCCGCTCTCACGACCCTTTTTGGGAAAAGAATTATATCCGGTCATTGGAATGTCACCGACGTCTGTAACGGATTACTGGGTGGATTCGCGGCAATAACCTCCGGCTGCTCGGTGGTCGAGCCGTGGGCGGCCGTTGTATGCGGGTTCGTTGCGGCGATCGTTCTGATCAGCTGCAACAAACTCGCGGAAAAAGTAAAATACGACGACCCGTTGGAGGCGGCGCAACTGCACGGCGGGTGCGGAGCGTGGGGGATCATTTTCACGGCGCTGTTCGCGACGGAGAAGTACGTGCGTGAAGTGTACGGAAAAGCGGGTGCGCCACACGGGTTGTTCATGGGTGGCGGAGGGAGGTTGTTGGCGGCTCACGTGATTCAAATTTTGGTGATTATCGGGTGGGTGAGTGCTACGATGGGTCCTTTGTTTTATGTTCTTCATAAGCTGAAGCTTTTGCGGATCTCGCCGGAAGATGAAATGGCGGGTATGGATATGACCCGACATGGAGGTTTTGCTTACGTTTACCATGACGAAGATGATTCCCCGGTCAATGGGACGTTGATGAGGAAAATTGAGCCAAACTCAACAACTCCTCCAATACCAAAGTAG 1506 52.92 MAATPCSVQDLAQLLGPNVTNSLAAASYICNQFTTTTNNYSDTKYAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNSFIGHHFFGLKSVPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSALTGFVYPVVSHWFWSPDGWAHPARQDGNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRMGRFDRSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGSFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRIISGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVVCGFVAAIVLISCNKLAEKVKYDDPLEAAQLHGGCGAWGIIFTALFATEKYVREVYGKAGAPHGLFMGGGGRLLAAHVIQILVIIGWVSATMGPLFYVLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDDSPVNGTLMRKIEPNSTTPPIPK 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48186979 48188484 + evm.model.ptg000003l.348 HCH6g1444 546938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1444 501 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH6g1444 501 FunFam Ammonium transporter 29 487 - -
HCH6g1444 501 Gene3D Ammonium transporter AmtB like domains 25 489 IPR029020 -
HCH6g1444 501 PANTHER AMMONIUM TRANSPORTER 27 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
HCH6g1444 501 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH6g1444 501 SUPERFAMILY Ammonium transporter 45 453 - -
HCH6g1444 501 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0668 HCH-Chr10:5870821 HCH6g1444 HCH-Chr6:48186979 1.20E-212 transposed
HCH5g0137 HCH-Chr5:822545 HCH6g1444 HCH-Chr6:48186979 8.50E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1444 K03320 - csv:101212168 880.167