Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1471 ATGGAAGAAGAGATCGGAGCAGAGTTTAAGAGAAGTGGTTTCACGTTTGACGAAGAAGAAGAGATTCTCAAGAAATGTCTTACGTTCTGTGTTAATTACAGTCTGAAGCCTTCGGATTTAGTTTCCAGCTGGGAAGTTTACTATCTCAATAGGCAATTAGATGGATCGTTGGTGCAGAATGCACAGATGGATGGATTTTTACAACATTTACAGAATGAGCAAAAAGAAGCTGTTATTAAAGAGGAACCGAATCTGCATGTTTACTCGAGCAAAGATGTGGACATGATTTTAAATGATGAGGACGGAAATCTAGAGGAAGACATTCCTAAAACTCCAAATGGGAGATTTCAGAATTTTCACAAGGAGCAATTTGATTCAACTCCCTATACAAATGGAGACCTGTTTTCTACTGGAAAACCTTCTAAGCATGTTACACCCTTTGGCCAGAGAACAGAGAAATTTGCTGTGAAAATCAGCATCAATAGTATGCCTGACAAGGAGATTGCTGAAAAAGAAGATGATCATGAGGATGATGAGAATGATATCATAAAGAAGGTTCAACCCCTCCAAAGGTGCTCCATGGCGGTCCATGGATCGGGACCCGAACCACATTGCAGGTTCATGTATGACAGAATTGAAGATAGGTTCAATGCACTTGATAACCGAATCATGAAGCATGCTAAAGCACTTTCTTTATCTGCGCAATATGAAGAACCAGTGGACCCAACAGTTGCATCACAGAAAAGCATGTTTGCAGTAGGCATGATCTGTTGTGACGGTGAAGGACGCTTGAACGATAAGTCTGCTTTGTTGCAAAGCAGTGTTGAGCATTCAGCAGGACAGCGAGTTCGTTTAGAATTACAAAACCTGAACCAGTTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGTCTAATTGCTTCCAAACTGGTAGATTCTTTTCCTTTGTCTGCCAATGTTGACACTTCTTTGCCTCCAGCAAAAAAGATAGCTTTGGACCATGAGATCCAGCCAAATGATCAATCCTGTACACAGTCAGAATTATCAATGATTGTTGCATCAGGCCCCTACACCACAACAGACAACTTATTGTTTGAGCCTTTGACAGAGTTACTAGCATATGCAAAGAGAAAGTTTCCTCAGCTACTAATATTGCTAGGGCCGTTTATTGATTCTGAACATCCTGATATCAAGAGAGGAACTGTAGGCAGGAGCTTTGAGGAAATATTCAACTTTGAAATTCTCAGAAGGCTGCAAGATTATGCCGAACATATGGGTCCTGATGCACGTGTGCTTTTGATGCCATCTATAAGGGATGCTAATCATGATTTTGTTTTCCCTCAGCCGGCTTATGACATTCCACCTGATCTTAGGTTTCAGATAACCAGTCTTGCAAACCCAGGCATTTTGGAAGCAAACCAGGTAAAGATAGGTTGCTGCACCACAGATATTCTTAGACACCTCAGTGGAGAAGAGTTGTCAAGAAACTCAACAAAGGGAACAGTAAATGACCGTATGAGCATGCTTGCAAGTCATATACTTCGCCAACGCAGGCATGTTAACTTTTATCCTCTATATCCACCCGCGGAAGGAGTCCCATTGGATTTATCTCTTGCTCCAGAAGCTCTTCACATATCTGTACTCCCAGATATTCTCATTCTTCCCTCTGACATGAAACACTTTGTGAAGGTTATATCCCTTGGGGGAGCAGAGGGAGAGGGAATGAGTTGCATATGTGTGAATCCTGGGAGACTGTCCAAGGGTGAAGGAGGGGGTACTTTTGTGGAGCTTCATTACTTTGGTAGTCCTGACCGGATAAAAGCCTCAATTGTCGGCTTATAA 1866 42.12 MEEEIGAEFKRSGFTFDEEEEILKKCLTFCVNYSLKPSDLVSSWEVYYLNRQLDGSLVQNAQMDGFLQHLQNEQKEAVIKEEPNLHVYSSKDVDMILNDEDGNLEEDIPKTPNGRFQNFHKEQFDSTPYTNGDLFSTGKPSKHVTPFGQRTEKFAVKISINSMPDKEIAEKEDDHEDDENDIIKKVQPLQRCSMAVHGSGPEPHCRFMYDRIEDRFNALDNRIMKHAKALSLSAQYEEPVDPTVASQKSMFAVGMICCDGEGRLNDKSALLQSSVEHSAGQRVRLELQNLNQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSANVDTSLPPAKKIALDHEIQPNDQSCTQSELSMIVASGPYTTTDNLLFEPLTELLAYAKRKFPQLLILLGPFIDSEHPDIKRGTVGRSFEEIFNFEILRRLQDYAEHMGPDARVLLMPSIRDANHDFVFPQPAYDIPPDLRFQITSLANPGILEANQVKIGCCTTDILRHLSGEELSRNSTKGTVNDRMSMLASHILRQRRHVNFYPLYPPAEGVPLDLSLAPEALHISVLPDILILPSDMKHFVKVISLGGAEGEGMSCICVNPGRLSKGEGGGTFVELHYFGSPDRIKASIVGL 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48353830 48358978 + evm.model.ptg000003l.321 HCH6g1471 546965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1471 621 Gene3D - 1 76 IPR043034 -
HCH6g1471 621 FunFam DNA polymerase alpha subunit B 1 74 - -
HCH6g1471 621 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 2 608 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
HCH6g1471 621 Pfam DNA polymerase alpha/epsilon subunit B 359 571 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH6g1471 621 PIRSF DNA_pol_alpha_2 1 613 IPR016722 -
HCH6g1471 621 FunFam DNA polymerase alpha subunit B 339 503 - -
HCH6g1471 621 Gene3D - 513 617 - -
HCH6g1471 621 Gene3D - 337 512 - -
HCH6g1471 621 Pfam DNA polymerase alpha subunit B N-terminal 3 50 IPR013627 -
HCH6g1471 621 Pfam DNA polymerase alpha subunit B, OB domain 218 319 IPR054300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1470 HCH-Chr6:48349594 HCH6g1471 HCH-Chr6:48353830 6.40E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1471 K02321 - csv:101206268 980.319