Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1472 ATGGCGGCCGAGGTAGCGGTGGAAGCTGCGGTAGCGGCTGCGACGGAGACAGCGACGGAGGTAGCAGAGACGAATCAAACGTCTCATAAATTGGAGAGAAAGTGGACGTTTTGGTACGATAATCAATCGAAGAAGCAAGGCGCTGCTTGGGGTTCAACTTTGCGTAAAGTCTATACCTTCGATACCGTCGAAGAATTTTGGTGCTTGTACGATCAGATATTCAAGCCGAGCAAGTTTCCCGCTAATGCAGATTTCCATTTGTTCAAATCTGGAATCGAACCTAAATGGGAAGATCCTGAATGTGCTAATGGAGGAAAATGGTCTGCCACAAGCAGAGGAAAGGCTAACCTTGATAGCATTTGGCTCGAAACGTTGATGGCTTTGATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCTAGTGTGCGCCAGAGGCAGGATAAAATTGCCTTGTGGACCAAGACCTCAACGAACGAGGCTGCACAGATGGGCATTGGTAGGAAGTGGAAGGAGATAATTGACGTCACCGACAAAATTGCTTACAGCTTTCATGAGGACGCCAAAAAGGAAAGATCTGTGAAAAGTCGATACACTGTCTGA 612 47.39 MAAEVAVEAAVAAATETATEVAETNQTSHKLERKWTFWYDNQSKKQGAAWGSTLRKVYTFDTVEEFWCLYDQIFKPSKFPANADFHLFKSGIEPKWEDPECANGGKWSATSRGKANLDSIWLETLMALIGEQFEESDEICGVVASVRQRQDKIALWTKTSTNEAAQMGIGRKWKEIIDVTDKIAYSFHEDAKKERSVKSRYTV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48359840 48361731 + evm.model.ptg000003l.320 HCH6g1472 546966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1472 203 FunFam Eukaryotic translation initiation factor 4E 20 203 - -
HCH6g1472 203 Gene3D RNA Cap, Translation Initiation Factor Eif4e 3 201 IPR023398 -
HCH6g1472 203 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 17 195 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
HCH6g1472 203 Pfam Eukaryotic initiation factor 4E 30 182 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g1472 203 SUPERFAMILY eIF4e-like 18 195 IPR023398 -
HCH6g1472 203 ProSitePatterns Eukaryotic initiation factor 4E signature. 84 107 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0749 HCH-Chr3:5437155 HCH6g1472 HCH-Chr6:48359840 3.40E-58 dispersed
HCH6g1472 HCH-Chr6:48359840 HCH9g1409 HCH-Chr9:46480960 5.60E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1472 K03259 - csv:101208495 340.117