Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g1472 | ATGGCGGCCGAGGTAGCGGTGGAAGCTGCGGTAGCGGCTGCGACGGAGACAGCGACGGAGGTAGCAGAGACGAATCAAACGTCTCATAAATTGGAGAGAAAGTGGACGTTTTGGTACGATAATCAATCGAAGAAGCAAGGCGCTGCTTGGGGTTCAACTTTGCGTAAAGTCTATACCTTCGATACCGTCGAAGAATTTTGGTGCTTGTACGATCAGATATTCAAGCCGAGCAAGTTTCCCGCTAATGCAGATTTCCATTTGTTCAAATCTGGAATCGAACCTAAATGGGAAGATCCTGAATGTGCTAATGGAGGAAAATGGTCTGCCACAAGCAGAGGAAAGGCTAACCTTGATAGCATTTGGCTCGAAACGTTGATGGCTTTGATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCTAGTGTGCGCCAGAGGCAGGATAAAATTGCCTTGTGGACCAAGACCTCAACGAACGAGGCTGCACAGATGGGCATTGGTAGGAAGTGGAAGGAGATAATTGACGTCACCGACAAAATTGCTTACAGCTTTCATGAGGACGCCAAAAAGGAAAGATCTGTGAAAAGTCGATACACTGTCTGA | 612 | 47.39 | MAAEVAVEAAVAAATETATEVAETNQTSHKLERKWTFWYDNQSKKQGAAWGSTLRKVYTFDTVEEFWCLYDQIFKPSKFPANADFHLFKSGIEPKWEDPECANGGKWSATSRGKANLDSIWLETLMALIGEQFEESDEICGVVASVRQRQDKIALWTKTSTNEAAQMGIGRKWKEIIDVTDKIAYSFHEDAKKERSVKSRYTV | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 48359840 | 48361731 | + | evm.model.ptg000003l.320 | HCH6g1472 | 546966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g1472 | 203 | FunFam | Eukaryotic translation initiation factor 4E | 20 | 203 | - | - | |
HCH6g1472 | 203 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 3 | 201 | IPR023398 | - | |
HCH6g1472 | 203 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 17 | 195 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER) | |
HCH6g1472 | 203 | Pfam | Eukaryotic initiation factor 4E | 30 | 182 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
HCH6g1472 | 203 | SUPERFAMILY | eIF4e-like | 18 | 195 | IPR023398 | - | |
HCH6g1472 | 203 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 84 | 107 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0749 | HCH-Chr3:5437155 | HCH6g1472 | HCH-Chr6:48359840 | 3.40E-58 | dispersed | |
HCH6g1472 | HCH-Chr6:48359840 | HCH9g1409 | HCH-Chr9:46480960 | 5.60E-25 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g1472 | K03259 | - | csv:101208495 | 340.117 |