Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1494 ATGGAGGCTACCAGGTGTTGGTTTAATAAGTTCAGATCCAAAGATAAGCCGAAGTCTTCAACAAATAAGGAGACTGCAGGCAATGGGAGAGATGCATCAAAAGCACCAAACAATGAAGAGTTACCCTCAAATGTCACCAAGCAGAAGGTTTTAGCTGCAAAACAGTATATAGAAAACCATTATAAGAAGCAAATGAAGAGCTTGGAAGAAAGAAAGGAGAGGCGCCATGTGCTAGAAAAGAAGTTGGCTGATGCTGAGGTTTCCCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTGGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCAGACGATTTTGAGCCGCTGACAATGATAGGGAGGGGTGCGTTTGGAGAGGTTAGAGTTTGTAGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAATTTGCTTGCGGAGGTTGATAGCAATTGCATTGTTAAGCTTTACTGCTCTTTCCAAGACGAGGAATATTTATATCTTATTATGGAATACTTGCCTGGTGGAGATATGATGACTTTGCTGATGCGGAAAGATACGCTTACAGAAGACGAGGCCCGATTTTATGTTGGAGAAACAGTTTTAGCTATCGAGTCCATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTACTTGACAAATATGGTCATATGAAATTATCAGATTTTGGATTATGTAAACCACTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAATAACCTTAGTGGAGCACTTCAAAGTGACGGGCGTCCCCTGGCATCAAAACGTACCCAACAGGAACAATTACAGCATTGGCAAAGGAACAGGAGGATGCTTGCTTATTCTACTGTTGGAACTCCAGACTATATTGCTCCAGAAGTTTTACTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCTCTTGGTGCTATCATGTATGAAATGCTTGTTGGATATCCACCATTCTACTCGGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATTTAATCAGTAAACTCCTGTGCAATGTTGAACAAAGGCTTGGGACTAAGGGGGCAGATGAAATAAAGGCTCACCCATGGTTCATAGGCATTGAGTGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCCGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGATAACCAAATTCCGACATCAACAAAATCAGGTCCATGGAGGAAGATGCTGTCATCGAAGGATATCAACTTTGTGGGTTACACATACAAAAACTTTGAAATCGTTGATGATAATCAATTACCTGGGATCGCTGAATTGAAGAAGAAGAGCACGAAGTCGAAAAGACCTTCCATCAAATCTCTCTTTGATAATGAATCCTCAATGGCTACCAATCAACCCGTTCAAGGAAGCTTTTTAAAACTCTTGCCTCCTCAGCTAGAAGTCCCTGAGAAAGAGATGAGCGCTAACGAGAATCACTCATAA 1659 40.75 MEATRCWFNKFRSKDKPKSSTNKETAGNGRDASKAPNNEELPSNVTKQKVLAAKQYIENHYKKQMKSLEERKERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPLASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFIGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETDNQIPTSTKSGPWRKMLSSKDINFVGYTYKNFEIVDDNQLPGIAELKKKSTKSKRPSIKSLFDNESSMATNQPVQGSFLKLLPPQLEVPEKEMSANENHS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48512087 48517042 - evm.model.ptg000003l.298 HCH6g1494 546988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1494 552 SMART pkinase_C_6 419 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 FunFam Non-specific serine/threonine protein kinase 317 436 - -
HCH6g1494 552 CDD MobB_NDR_LATS-like 53 114 - -
HCH6g1494 552 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524(InterPro)
HCH6g1494 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 485 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH6g1494 552 MobiDBLite consensus disorder prediction 1 47 - -
HCH6g1494 552 Gene3D Phosphorylase Kinase; domain 1 117 202 - -
HCH6g1494 552 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
HCH6g1494 552 MobiDBLite consensus disorder prediction 7 21 - -
HCH6g1494 552 MobiDBLite consensus disorder prediction 500 528 - -
HCH6g1494 552 FunFam Non-specific serine/threonine protein kinase 90 202 - -
HCH6g1494 552 MobiDBLite consensus disorder prediction 512 528 - -
HCH6g1494 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 FunFam Non-specific serine/threonine protein kinase 203 270 - -
HCH6g1494 552 SMART serkin_6 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 CDD STKc_NDR_like 117 482 - -
HCH6g1494 552 Gene3D Transferase(Phosphotransferase) domain 1 314 436 - -
HCH6g1494 552 Gene3D Transferase(Phosphotransferase) domain 1 203 268 - -
HCH6g1494 552 Pfam Protein kinase domain 315 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 Pfam Protein kinase domain 121 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 Coils Coil 68 102 - -
HCH6g1494 552 SUPERFAMILY Protein kinase-like (PK-like) 94 470 IPR011009 -
HCH6g1494 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g1494 552 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1147 HCH-Chr14:38320155 HCH6g1494 HCH-Chr6:48512087 1.40E-224 dispersed
HCH4g0643 HCH-Chr4:4208583 HCH6g1494 HCH-Chr6:48512087 2.80E-169 dispersed
HCH5g0741 HCH-Chr5:5399767 HCH6g1494 HCH-Chr6:48512087 8.10E-71 dispersed
HCH5g1322 HCH-Chr5:50162037 HCH6g1494 HCH-Chr6:48512087 4.90E-249 dispersed
HCH6g1494 HCH-Chr6:48512087 HCH8g0627 HCH-Chr8:43070543 1.50E-184 dispersed
HCH6g1494 HCH-Chr6:48512087 HCH12g0486 HCH-Chr12:2843049 3.80E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81599 PF00069 Pkinase 2.20E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1494 K08790 - csv:101205120 1061.6