Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g1505 ATGGATTCCTCATTTTTTCACTCCCACAATTCCGATTTCTCATCGGAATCCTCCCTCGGATCATTTGATTCATTTTCTTGGGAAAGTTTTGGATTTGATTATAACAACAAGTCTCTGCCTTTCAATGAGAATGACTCTGAAGAAATGCTTCTCTACGGCTTGATTTCCAAAGCCACCCTTGACTCACCGGAAAATCTCCAACGGAGGAATCCGATCAAGGAAGAAGAGGTCGATTCACTCGGAGAAGAAGAACCCCACAAGGAAAAGTCCTACAGAGGAGTCCGGCGGCGTCCATGGGGGAAATTCGCAGCGGAGATAAGGGATTCAACGAGAAATGGAGTTAGAGTTTGGTTAGGAACATTTGATAGCGCTGAAGCAGCCGCTTTAGCCTACGATCAAGCGGCTTTTTCGATGCGGGGTTCGGCCGCCGTTCTCAACTTTCCGGCGGATAGAGTGAAGGAATCACTGAAAGAGATGGAAATGATGAACTCCGGTGGCGGCGACGGTGACTCTCCGGTGGTAGCTCTGAAAAGAAAACATTCTATGAGAAGGAAATTCACAAGGAAGAAAAGTAAAGAGAGAGATGTGATTGCAAAAACAGAGGATGATGATAATAATAATGTGGTCGTGTTACAAGATTTGGGTCCTGATTATTTGGAAGAACTTTTGGAGTCATCGGAGAATGTTATTTGGCCACGGTGA 702 45.16 MDSSFFHSHNSDFSSESSLGSFDSFSWESFGFDYNNKSLPFNENDSEEMLLYGLISKATLDSPENLQRRNPIKEEEVDSLGEEEPHKEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPADRVKESLKEMEMMNSGGGDGDSPVVALKRKHSMRRKFTRKKSKERDVIAKTEDDDNNNVVVLQDLGPDYLEELLESSENVIWPR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48614265 48614966 - evm.model.ptg000003l.287 HCH6g1505 546999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g1505 233 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 CDD AP2 89 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677(InterPro)
HCH6g1505 233 FunFam Ethylene-responsive transcription factor 2 89 149 - -
HCH6g1505 233 SMART rav1_2 90 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 MobiDBLite consensus disorder prediction 67 91 - -
HCH6g1505 233 PANTHER DNA-BINDING DOMAIN 48 193 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH6g1505 233 MobiDBLite consensus disorder prediction 63 92 - -
HCH6g1505 233 MobiDBLite consensus disorder prediction 1 20 - -
HCH6g1505 233 Pfam AP2 domain 90 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g1505 233 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0961 HCH-Chr14:37078258 HCH6g1505 HCH-Chr6:48614265 5.90E-25 dispersed
HCH5g1316 HCH-Chr5:49952266 HCH6g1505 HCH-Chr6:48614265 1.10E-45 dispersed
HCH6g1505 HCH-Chr6:48614265 HCH7g1327 HCH-Chr7:46177944 1.60E-60 dispersed
HCH6g1505 HCH-Chr6:48614265 HCH6g1506 HCH-Chr6:48625904 9.60E-21 tandem
HCH5g0091 HCH-Chr5:572962 HCH6g1505 HCH-Chr6:48614265 1.20E-39 wgd
HCH6g1505 HCH-Chr6:48614265 HCH7g1325 HCH-Chr7:46160915 1.10E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33784 PF00847 AP2 9.00E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g1505 K14516 - csv:101206564 315.079